Difference between revisions of "mrcImageFOMCalc"
From EosPedia
(Created page with "'''mrcImageFOMCalc''' is Eos's Command that calculates FOM(Figure of merit) of mrcImage(3DFFT). ==Algorithm== <div>Refer the references in the following about alg...") |
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<td><p align="Center">[[File:Input-121P-N1-FFT.png]]<br> | <td><p align="Center">[[File:Input-121P-N1-FFT.png]]<br> | ||
| − | [[mrcFFTExpression]](m=1) | + | by using [[mrcFFTExpression]](m=1)<br></p> |
</td> | </td> | ||
<td><p align="left">Min<br> | <td><p align="left">Min<br> | ||
Latest revision as of 02:58, 24 July 2014
mrcImageFOMCalc is Eos's Command that calculates FOM(Figure of merit) of mrcImage(3DFFT).
Algorithm
Refer the references in the following about algorithm of FOM(Figure of merit).
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Optional | Input: mrcImage(FFT)(3D) | NULL |
| -I | Optional | Input: ASCII(File List) | NULL |
| -r | Essential | Reference: mrcImage(FFT)(3D) | NULL |
| -o | Optional | Output: ASCII | stdout |
| -w | Optional | Weight | 1.0 |
| -RR | Optional | Ring Range (Rmin, Rmax) | (0.0, 0.1) |
| -dR | Optional | Ring Width | 0.0 |
| -nS | Optional | Sector Number | 1 |
| -dA | Optional | delta Alpha | 5 |
| -XMax | Optional | Xmax: If not set, one calc Xmax | 0.0 |
| -AS | Optional | Auto Scaling | |
| -AAS | Optional | All Area Auto Scaling | 0.05 |
| -RS | Optional | R Scaling | |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-i or -I is essential.
-m details
| Value | Description |
|---|---|
| 0 |
-I format
3DFFT File 3DFFT File . .
Execution example
Input file's image
-i file's image
|
Min Max |
0.466157 (79, 38, 83) 11101.8 (0, 0, 0) |
-r file's image
|
Min Max |
0.337695 (84, 41, 49) 10881.2 (0, 0, 0) |
-I 's data
Input-121P-N.fft 1.0 Input-121P-N2.fft 1.0
Input-121P-N.fft is -i file.
Input-121P-N2.fft's image
|
Min Max |
-2175.23 (42, 93, 33) 4252.65 (42, 64, 56) |
-i data
Case: No other settings
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6693 2588 1.5496e+05 1.0000e+00
Case: w=2.0
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6078 2588 8.5440e+02 2.0000e+00
Case: RR=(0.1, 0.6)
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 1.0000e-01 6.0000e-01 0.4923 408780 8.8144e+04 1.0000e+00
Case: dR=0.01
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-02 nan 0 0.0000e+00 1.0000e+00 1.0000e-02 2.0000e-02 0.9982 28 1.5495e+05 1.0000e+00 2.0000e-02 3.0000e-02 0.9407 60 1.5496e+05 1.0000e+00 3.0000e-02 4.0000e-02 0.8423 112 1.0873e+04 1.0000e+00 4.0000e-02 5.0000e-02 0.7840 156 1.0872e+04 1.0000e+00 5.0000e-02 6.0000e-02 0.7246 268 4.0601e+02 1.0000e+00 6.0000e-02 7.0000e-02 0.7007 328 4.4218e+03 1.0000e+00 7.0000e-02 8.0000e-02 0.6649 408 2.3074e+02 1.0000e+00 8.0000e-02 9.0000e-02 0.6015 520 3.9558e+03 1.0000e+00 9.0000e-02 1.0000e-01 0.6063 672 9.1944e+02 1.0000e+00
Case: nS=10
##Sector index 0/ 10 0.00 9.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6914 552 1.5496e+05 1.0000e+00 ##Sector index 1/ 10 9.00 18.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6572 304 1.5496e+05 1.0000e+00 ##Sector index 2/ 10 18.00 27.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6687 376 1.5496e+05 1.0000e+00 ##Sector index 3/ 10 27.00 36.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6560 296 1.5496e+05 1.0000e+00 ##Sector index 4/ 10 36.00 45.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6729 296 1.5496e+05 1.0000e+00 ##Sector index 5/ 10 45.00 54.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.7008 232 1.5496e+05 1.0000e+00 ##Sector index 6/ 10 54.00 63.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6690 196 1.5496e+05 1.0000e+00 ##Sector index 7/ 10 63.00 72.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6572 176 1.5496e+05 1.0000e+00 ##Sector index 8/ 10 72.00 81.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.5504 92 1.5496e+05 1.0000e+00 ##Sector index 9/ 10 81.00 90.00 9.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6745 68 1.5496e+05 1.0000e+00
Case: dA=3
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6691 2588 1.5496e+05 1.0000e+00
Case: AAS=0.01
All Area Scaling Calc. Start: 1 ScalingFactor 0: 0.995613 = 1.83391e+06/1.82586e+06 ##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6693 2588 3.2948e+04 9.9561e-01
-AS
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6693 2588 2.8993e+04 9.9509e-01
-RS
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.6289 2588 4.2090e+03 1.0000e+00
-I data
Case: No other settings
sumPP is zero sumPP is zero ... sumPP is zero ##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 1.0000e-01 0.8316 5176 2.6579e+05 1.0000e+00 1.0000e+00
Case: -RS, RR=(0.0, 0.05)
##Sector index 0/ 1 0.00 90.00 90.00 ## minR< <=maxR FOM Num XMax Scaling 0.0000e+00 5.0000e-02 0.9090 784 9.9502e+02 1.0000e+00 1.0000e+00
