Difference between revisions of "mrcImageCorrelation"
(→Main option) |
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| Line 20: | Line 20: | ||
<td>-o</td> | <td>-o</td> | ||
<td>Optional</td> | <td>Optional</td> | ||
| − | <td>Output: [[mrcImage]]</td> | + | <td>Output: [[mrcImage]](Correlation Map)</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
| Line 26: | Line 26: | ||
<td>-O</td> | <td>-O</td> | ||
<td>Optional</td> | <td>Optional</td> | ||
| − | <td>Output: [[mrcImage]]</td> | + | <td>Output: [[mrcImage]](Correlation Map for Refinement)</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
Latest revision as of 00:44, 26 August 2014
mrcImageCorrelation is Eos's Command that creates a correlation map.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -o | Optional | Output: mrcImage(Correlation Map) | NULL |
| -O | Optional | Output: mrcImage(Correlation Map for Refinement) | NULL |
| -r | Essential | Reference: mrcImage | NULL |
| -corInfo | Optional | Correlation Info: ASCII | stdout |
| -a | Optional | Averaged File between 2 images | NULL |
| -s | Optional | Shifted InputFile | NULL |
| -refine | Optional | Refine | (RefineStep RefineRange RefineMode)→(0.25 3.0 2) RefineStep: Setting step |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode1 | 0 |
| -M | Optional | Mode2 | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | Normal Correlation: FxG* |
| 1 | Phase Correlation: FxG*/|FxG*| |
| 2 | Phase Correlation: FxG*/sqrt(|FxG*|) |
| 3 | Normalized Normal Correlation: FxG*/(|F||G|) |
| 16 | (0,0) = 0 |
-M details
| Value | Description |
|---|---|
| 0 | Correlation by FFT. Output is a mrcImage to file. |
| 1 | Normalized correlation value. No shift transform and No Correlation Map |
Execution example
------Input file's image------
| with Noise | no Noise | |||||
 |
Min Max |
-45.2205 61.1583 |
 |
Min Max |
0 39.0578 |
------Reference file's image------
 |
Min Max |
-44.5884 62.2917 |
 |
Min Max |
0 40.8834 |
------Option -o------
 |
Min Max |
-696.555 2670.19 |
 |
Min Max |
-0.000195313 2169.32 |
------Option -O------
Case: refine=1.75 70 0
 |
Min Max |
1.23885 1.44004 |
 |
Min Max |
0.262565 1.41038 |
Case: refine=1.75 70 1
 |
Min Max |
1.45204 1.63609 |
 |
Min Max |
0.696388 1.63042 |
Case: refine=1.75 70 2
 |
Min Max |
1.71269 1.86756 |
 |
Min Max |
1.12474 1.99758 |
------Option -corInfo------
Case: M=0
Case: M=1
------Option -a------
 |
Min Max |
-35.1267 59.0675 |
 |
Min Max |
0 38.1336 |
------Option -s------
 |
Min Max |
-44.5884 62.2917 |
 |
Min Max |
0 39.0578 |
------Option -m------
Case: m=0
|
Min Max |
-696.555 2670.19 |
|
Min Max |
-0.000195313 2169.32 |
Case: m=1
 |
Min Max |
-3.67017 3.71466 |
 |
Min Max |
-9.80742 7.48342 |
Case: m=2
 |
Min Max |
-44.7368 62.2468 |
 |
Min Max |
-6.01609 44.7194 |
Case: m=3
 |
Min Max |
-0.0672328 0.257732 |
 |
Min Max |
-1.78814e-08 0.199896 |
Case: m=16
 |
Min Max |
-826.059 2540.68 |
 |
Min Max |
-135.653 2033.67 |
