Difference between revisions of "mrcImageSmoothing"
From EosPedia
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Latest revision as of 06:08, 4 March 2015
mrcImageSmoothing is Eos's Command that performs Nonlinear smoothing mrcImage.
Contents
List of option
Main option
Option | Essential/Optional | Description | Default |
---|---|---|---|
-i | Essential | Input名: mrcImage | NULL |
-o | Optional | Output名: mrcImage | stdout(Standard output by default) |
-sx | Optional | x of Kernel Size | 3 |
-sy | Optional | y of Kernel Size | 3 |
-sz | Optional | z of Kernel Size | 3 |
-r | Optional | Radius of Kernel Size | 1 |
-sigma | Optional | Sigma (For m=4) | 2.0 |
-times | Optional | Repeat time | 1 |
-c | Optional | ConfigurationFile | NULL |
-m | Optional | Mode | 0 |
-M | Optional | Mode2 | 0 |
-h | Optional | Help |
-m details
Value | Description |
---|---|
1 | Median filter |
2 | Mean filter |
3 | Surface Fit filter |
4 | Lee-Sigma filter |
m=0, at the default setting. Therefore, It is error if -m isn't set.
-M details
Value | Description |
---|---|
0 | Kernel is cube. : required argumnent: -sx, -sy, [-sz] |
1 | Kernel is sphere.(Only mode 1 supported) : required argumnent: -r |
Execution example
Example of Option -h
$ mrcImageSmoothing -h Usage: /home/people/tacyas/Eos/bin/X86LINUX64/mrcImageSmoothing Options: [-i[nput] In (NULL )] :Essential :InputDataFile [-o[utput] Out (NULL )] :Essential :OutputDataFile [-sx sx (3 )] :Optional :x of Kernel Size [-sy sy (3 )] :Optional :y of Kernel Size [-sz sz (3 )] :Optional :z of Kernel Size [-r r (1 )] :Optional :Radius of Kernel Size [-sigma sigma (2.0 )] :Optional :Sigma for Lee-Sigma [-m[ode] mode (0 )] :Optional :Mode [-M[ode2] mode2 (0 )] :Optional :Mode [-c[onfig] configFile (NULL )] :Optional :ConfigurationFile >>> Mode <<<< 1: Median filter 2: Mean filter 3: Surface Fit filter 4: Lee-Sigma filter >>> Mode2 <<<< 0: Kernel is cube. : required argumnent: -sx, -sy, [-sz] 1: Kernel is sphere.(Only mode 1 supported) : required argumnent: -r
Input file's image
![]() |
Min Max |
-65.0178 94.4699 |
Option -m, -M
Case: m=1
Case: m=2
![]() |
Min Max |
-41.8721 67.5276 |
Case: M=0 with -sx=9,-sy=9 |
![]() |
Min Max |
-54.6403 54.0644 |
Case: m=3
![]() |
Min Max |
-41.8721 83.4967 |
Case: M=0 with -sx=9,-sy=9 |
![]() |
Min Max |
-54.6403 56.99 |