mrcImageCircumferentialProjection

mrcImageCircumferentialProjection is Eos's Command that transforms the 3D image to a cylindrical coordinate system, and shows only that particular range.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-dang	Optional	角度の加算値: [deree]	10
-zmin	Optional	Zの最小値: [A]	0
-zmax	Optional	Zの最大値: [A]	100
-dz	Optional	Zの加算値: [A]	10
-rmin	Optional	半径の最小値: [A]	0
-rmax	Optional	半径の最大値: [A]	200
-dr	Optional	半径の加算値: [A]	10
-threshold	Optional	閾値を設定(平均密度が閾値以上)	0
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0	平均密度を出力 (dataSum = dataSum / nang)
1	加重密度を出力 (dataSum = dataSum / nang *(2*PI*r))
2	閾値以上の平均密度を出力 (dataSum = dataSum / [nang number more than threshold value] *(2*PI*r))

Execution example

Input file image

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 5.57707 (44, 26, 0) 0.0491543 0.360381 0.000522291

Example of options only essential

Min Max Mean SD SE

0 (0, 0, 0) 3.12088 (10, 6, 0) 0.113243 0.444362 0.0292369

Option -rmin, -rmax, dr

rmin=90, rmax=110, dr=1

Min Max Mean SD SE

0.0895108 (20, 4, 0) 3.12088 (10, 6, 0) 1.12399 0.711393 0.0468062

In the following, Setting atrmin=90, rmax=110, dr=1で実行

Option -dang

dang=1

Min Max Mean SD SE

0.0659651 (20, 4, 0) 3.25403 (9, 6, 0) 1.16162 0.746197 0.0490961

Option -zmin, -zmax, -dz

zmin=10, zmax=50, dz=1

Case: No other settings

Min Max Mean SD SE

0.0895382 (20, 4, 0) 2.17163 (10, 25, 0) 1.07994 0.645594 0.0220018

threshold=1.8

Min Max Mean SD SE

0 (0, 0, 0) 1.78549 (11, 25, 0) 0.511454 0.599524 0.0204317

Option -m

m=1

Min Max Mean SD SE

61.8654 (20, 4, 0) 1960.91 (10, 6, 0) 705.471 447 29.4105

m=2, threshold=2

Min Max Mean SD SE

0 (0, 0, 0) 3.68241 (11, 6, 0) 1.1925 1.19853 0.0788573