mrcImage3DSymmetryFind

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mrcImage3DSymmetryFind is Eos's Command.


List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: mrcImage(3D) NULL
-o Optional Output: SymmetryFindParameters stdout
-a Optional Output: SymmetryAverage NULL
-S Optional SpaceGroupNumber 0
-RotMode Optional Rotation mode of Euler Angle XOYS
-Rot1 Optional (minRot1, maxRot1, dRot1): [degree] (0, 360, 1.0)
-Rot2 Optional (minRot2, maxRot2, dRot2): [degree] (-90, 90, 1.0)
-dCos Optional dCos 1
-CorMode Optional CorrelationMode 16
-OffsetMode Optional OffsetMode 0
-InterpolationMode Optional InterpolationMode 2
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help 　

-m details

Value Description
0


Execution example

Input file image

Input-ThickFilaments5-P.png
xy-plane

Input1-ThickFilaments5-P.png
yz-plane

Min

Max
Mean
SD

SE

0 (0, 0, 0)

2.33767 (57, 32, 45)
0.00497068
0.0883357

0.000172531


In the following, Setting at S=5

Option -Rot1, -Rot2

Rot1=(0, 360, 30), Rot2=(-90, 90, 30)

Output
COR: 0.000000 -90.000000 2.183189 0.000000 1.000000 61.000000
CORMAX: 0.000000 -90.000000 2.183189 0.000000 1.000000 61.000000
COR: 0.000000 -60.000000 1.360026 0.000000 0.000000 5.000000
COR: 60.000000 -60.000000 0.078503 31.000000 5.000000 0.000000
COR: 120.000000 -60.000000 0.085735 40.000000 0.000000 35.000000
COR: 180.000000 -60.000000 1.360025 0.000000 0.000000 5.000000
COR: 240.000000 -60.000000 0.078503 31.000000 5.000000 0.000000
COR: 300.000000 -60.000000 0.085734 40.000000 0.000000 35.000000
COR: 0.000000 -30.000000 1.721305 0.000000 0.000000 61.000000
COR: 34.641016 -30.000000 0.086765 60.000000 13.000000 21.000000
COR: 69.282032 -30.000000 0.076439 22.000000 61.000000 58.000000

...

COR: 346.410162 30.000000 0.122974 23.000000 39.000000 54.000000
COR: 0.000000 60.000000 1.323306 1.000000 1.000000 54.000000
COR: 60.000000 60.000000 0.088660 29.000000 62.000000 47.000000
COR: 120.000000 60.000000 0.088762 15.000000 46.000000 35.000000
COR: 180.000000 60.000000 1.323306 1.000000 1.000000 54.000000
COR: 240.000000 60.000000 0.088660 29.000000 62.000000 47.000000
COR: 300.000000 60.000000 0.088762 15.000000 46.000000 35.000000
COR: 360.000000 60.000000 1.323306 1.000000 1.000000 54.000000
COR: 0.000000 90.000000 2.183188 0.000000 1.000000 61.000000


-a 's data

Outdata-Rot-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-Rot-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.54771e-06 (32, 5, 39)

1.17132 (57, 32, 15)
0.00524255
0.0559384

0.000109255


Rot1=(90, 180, 30), Rot2=(-90, 90, 30)

Output
COR: 90.000000 -90.000000 1.377612 1.000000 1.000000 57.000000
COR: 90.000000 -60.000000 1.377612 1.000000 1.000000 57.000000
COR: 150.000000 -60.000000 0.071598 17.000000 61.000000 56.000000
COR: 90.000000 -30.000000 1.377612 1.000000 1.000000 57.000000
COR: 124.641016 -30.000000 0.097275 6.000000 29.000000 30.000000
COR: 159.282032 -30.000000 0.081482 1.000000 56.000000 62.000000
COR: 90.000000 0.000000 1.377612 1.000000 1.000000 57.000000
COR: 120.000000 0.000000 0.069825 58.000000 1.000000 12.000000
COR: 150.000000 0.000000 0.083980 8.000000 42.000000 56.000000
COR: 180.000000 0.000000 1.650886 1.000000 0.000000 5.000000
COR: 90.000000 30.000000 1.377611 1.000000 1.000000 57.000000
COR: 124.641016 30.000000 0.103685 7.000000 34.000000 3.000000
COR: 159.282032 30.000000 0.079128 12.000000 58.000000 0.000000
COR: 90.000000 60.000000 1.377611 1.000000 1.000000 57.000000
COR: 150.000000 60.000000 0.091102 20.000000 4.000000 4.000000
COR: 90.000000 90.000000 1.377612 1.000000 1.000000 57.000000
CORMAX: 180.000000 0.000000 1.650886 1.000000 0.000000 5.000000


-a 's data

Outdata-Rot1-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-Rot1-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-6.08793e-06 (8, 43, 9)

1.17132 (57, 32, 45)
0.00524255
0.055938

0.000109254


Rot1=(0, 360, 30), Rot2=(0, 45, 15)

Output
COR: 0.000000 0.000000 1.650886 1.000000 0.000000 5.000000
COR: 30.000000 0.000000 0.076186 57.000000 3.000000 10.000000
COR: 60.000000 0.000000 0.082015 8.000000 61.000000 5.000000
COR: 90.000000 0.000000 1.377612 1.000000 1.000000 57.000000
COR: 120.000000 0.000000 0.069825 58.000000 1.000000 12.000000
COR: 150.000000 0.000000 0.083980 8.000000 42.000000 56.000000
COR: 180.000000 0.000000 1.650886 1.000000 0.000000 5.000000
COR: 210.000000 0.000000 0.076186 57.000000 3.000000 10.000000
COR: 240.000000 0.000000 0.082015 8.000000 61.000000 5.000000
COR: 270.000000 0.000000 1.377615 1.000000 1.000000 57.000000

...

COR: 0.000000 45.000000 2.199364 1.000000 1.000000 1.000000
COR: 42.426407 45.000000 0.071986 11.000000 36.000000 30.000000
COR: 84.852814 45.000000 0.182864 1.000000 3.000000 26.000000
COR: 127.279221 45.000000 0.068948 5.000000 63.000000 12.000000
COR: 169.705627 45.000000 0.217003 2.000000 4.000000 8.000000
COR: 212.132034 45.000000 0.076489 9.000000 45.000000 1.000000
COR: 254.558441 45.000000 0.128826 28.000000 33.000000 14.000000
COR: 296.984848 45.000000 0.128260 57.000000 62.000000 51.000000
COR: 339.411255 45.000000 0.081883 2.000000 0.000000 13.000000
CORMAX: 0.000000 45.000000 2.199364 1.000000 1.000000 1.000000


-a 's data

Outdata-Rot2-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-Rot2-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.45873e-06 (30, 6, 47)

1.17131 (57, 32, 60)
0.00524255
0.055938

0.000109254


Rot1=(0, 360, 30), Rot2=(-90, 90, 30)で実行

Option -RotMode

RotMode=YOYS

Output
COR: 0.000000 -90.000000 1.650886 1.000000 0.000000 5.000000
COR: 0.000000 -60.000000 0.076186 57.000000 3.000000 10.000000
COR: 60.000000 -60.000000 0.120710 19.000000 19.000000 59.000000
COR: 120.000000 -60.000000 0.108374 55.000000 1.000000 16.000000
COR: 180.000000 -60.000000 0.076186 57.000000 3.000000 10.000000
COR: 240.000000 -60.000000 0.120710 19.000000 19.000000 59.000000
COR: 300.000000 -60.000000 0.108374 55.000000 1.000000 16.000000
COR: 0.000000 -30.000000 0.082015 8.000000 61.000000 5.000000
COR: 34.641016 -30.000000 0.060247 53.000000 39.000000 3.000000
COR: 69.282032 -30.000000 0.121584 6.000000 16.000000 55.000000

...

COR: 346.410162 30.000000 0.085250 4.000000 28.000000 30.000000
COR: 0.000000 60.000000 0.083980 8.000000 42.000000 56.000000
COR: 60.000000 60.000000 0.102389 7.000000 3.000000 30.000000
COR: 120.000000 60.000000 0.103884 40.000000 43.000000 12.000000
COR: 180.000000 60.000000 0.083980 8.000000 42.000000 56.000000
COR: 240.000000 60.000000 0.102389 7.000000 3.000000 30.000000
COR: 300.000000 60.000000 0.103884 40.000000 43.000000 12.000000
COR: 360.000000 60.000000 0.083980 8.000000 42.000000 56.000000
COR: 0.000000 90.000000 1.650886 1.000000 0.000000 5.000000
CORMAX: 90.000000 0.000000 2.183189 0.000000 1.000000 61.000000


-a 's data

Outdata-RotMode-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-RotMode-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.25576e-06 (10, 18, 16)

1.17132 (57, 32, 15)
0.00524255
0.0559384

0.000109255


Option -dCos

dCos=2

Output
COR: 0.000000 -90.000000 2.183189 0.000000 1.000000 61.000000
COR: 30.000000 -90.000000 0.085503 0.000000 8.000000 0.000000
COR: 60.000000 -90.000000 0.069688 20.000000 58.000000 7.000000
COR: 90.000000 -90.000000 1.377612 1.000000 1.000000 57.000000
COR: 120.000000 -90.000000 0.068475 1.000000 7.000000 54.000000
COR: 150.000000 -90.000000 0.067421 10.000000 58.000000 3.000000
COR: 180.000000 -90.000000 2.183190 0.000000 1.000000 61.000000
COR: 210.000000 -90.000000 0.085503 0.000000 8.000000 0.000000
COR: 240.000000 -90.000000 0.069688 20.000000 58.000000 7.000000
COR: 270.000000 -90.000000 1.377615 1.000000 1.000000 57.000000

...

COR: 120.000000 90.000000 0.069688 20.000000 58.000000 7.000000
COR: 150.000000 90.000000 0.085502 0.000000 8.000000 0.000000
COR: 180.000000 90.000000 2.183188 0.000000 1.000000 61.000000
COR: 210.000000 90.000000 0.067421 10.000000 58.000000 3.000000
COR: 240.000000 90.000000 0.068475 1.000000 7.000000 54.000000
COR: 270.000000 90.000000 1.377615 1.000000 1.000000 57.000000
COR: 300.000000 90.000000 0.069688 20.000000 58.000000 7.000000
COR: 330.000000 90.000000 0.085503 0.000000 8.000000 0.000000
COR: 360.000000 90.000000 2.183188 0.000000 1.000000 61.000000
CORMAX: 180.000000 -90.000000 2.183190 0.000000 1.000000 61.000000


-a 's data

Outdata-dCos-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-dCos-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-8.51144e-06 (10, 18, 18)

1.17132 (57, 32, 15)
0.00524255
0.0559384

0.000109255


Option -CorMode

CorMode=0

Output
COR: 0.000000 -90.000000 2.197224 0.000000 1.000000 61.000000
COR: 0.000000 -60.000000 1.374043 0.000000 0.000000 5.000000
COR: 60.000000 -60.000000 0.092597 31.000000 5.000000 0.000000
COR: 120.000000 -60.000000 0.099758 40.000000 0.000000 35.000000
COR: 180.000000 -60.000000 1.374043 0.000000 0.000000 5.000000
COR: 240.000000 -60.000000 0.092597 31.000000 5.000000 0.000000
COR: 300.000000 -60.000000 0.099758 40.000000 0.000000 35.000000
COR: 0.000000 -30.000000 1.735318 0.000000 0.000000 61.000000
COR: 34.641016 -30.000000 0.100761 60.000000 13.000000 21.000000
COR: 69.282032 -30.000000 0.090407 22.000000 61.000000 58.000000

...

COR: 346.410162 30.000000 0.136882 23.000000 39.000000 54.000000
COR: 0.000000 60.000000 1.337318 1.000000 1.000000 54.000000
COR: 60.000000 60.000000 0.102703 29.000000 62.000000 47.000000
COR: 120.000000 60.000000 0.102782 15.000000 46.000000 35.000000
COR: 180.000000 60.000000 1.337319 1.000000 1.000000 54.000000
COR: 240.000000 60.000000 0.102703 29.000000 62.000000 47.000000
COR: 300.000000 60.000000 0.102782 15.000000 46.000000 35.000000
COR: 360.000000 60.000000 1.337318 1.000000 1.000000 54.000000
COR: 0.000000 90.000000 2.197222 0.000000 1.000000 61.000000
CORMAX: 0.000000 -90.000000 2.197224 0.000000 1.000000 61.000000


-a 's data

Outdata-CorMode0-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-CorMode0-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.54771e-06 (32, 5, 39)

1.17132 (57, 32, 15)
0.00524255
0.0559384

0.000109255


CorMode=1

Output
COR: 0.000000 -90.000000 191.501678 0.000000 1.000000 12.000000
COR: 0.000000 -60.000000 76.109550 0.000000 0.000000 54.000000
COR: 60.000000 -60.000000 8.493662 31.000000 5.000000 0.000000
COR: 120.000000 -60.000000 7.064181 63.000000 31.000000 5.000000
COR: 180.000000 -60.000000 76.109619 0.000000 0.000000 54.000000
COR: 240.000000 -60.000000 8.493727 31.000000 5.000000 0.000000
COR: 300.000000 -60.000000 7.064159 63.000000 31.000000 5.000000
COR: 0.000000 -30.000000 118.692253 0.000000 0.000000 12.000000
COR: 34.641016 -30.000000 8.690958 43.000000 46.000000 53.000000
COR: 69.282032 -30.000000 7.165199 30.000000 31.000000 11.000000

...

COR: 346.410162 30.000000 14.205758 0.000000 10.000000 51.000000
COR: 0.000000 60.000000 71.928177 1.000000 1.000000 54.000000
COR: 60.000000 60.000000 7.827852 5.000000 8.000000 31.000000
COR: 120.000000 60.000000 8.705132 54.000000 0.000000 18.000000
COR: 180.000000 60.000000 71.928482 1.000000 1.000000 54.000000
COR: 240.000000 60.000000 7.827887 5.000000 8.000000 31.000000
COR: 300.000000 60.000000 8.705167 54.000000 0.000000 18.000000
COR: 360.000000 60.000000 71.928558 1.000000 1.000000 54.000000
COR: 0.000000 90.000000 191.501495 0.000000 1.000000 12.000000
CORMAX: 0.000000 -90.000000 191.501678 0.000000 1.000000 12.000000


-a 's data

Outdata-CorMode-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-CorMode-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.54771e-06 (32, 5, 24)

1.17132 (57, 32, 45)
0.00524255
0.0559389

0.000109256


CorMode=2

Output
COR: 0.000000 -90.000000 15.875746 0.000000 1.000000 12.000000
COR: 0.000000 -60.000000 8.264269 0.000000 0.000000 54.000000
COR: 60.000000 -60.000000 0.648076 31.000000 5.000000 0.000000
COR: 120.000000 -60.000000 0.600062 40.000000 0.000000 50.000000
COR: 180.000000 -60.000000 8.264269 0.000000 0.000000 54.000000
COR: 240.000000 -60.000000 0.648076 31.000000 5.000000 0.000000
COR: 300.000000 -60.000000 0.600059 40.000000 0.000000 50.000000
COR: 0.000000 -30.000000 11.065264 0.000000 0.000000 12.000000
COR: 34.641016 -30.000000 0.677072 60.000000 13.000000 21.000000
COR: 69.282032 -30.000000 0.532551 13.000000 13.000000 3.000000

...

COR: 346.410162 30.000000 0.976308 0.000000 10.000000 51.000000
COR: 0.000000 60.000000 7.939377 1.000000 1.000000 54.000000
COR: 60.000000 60.000000 0.662591 29.000000 62.000000 17.000000
COR: 120.000000 60.000000 0.631593 16.000000 47.000000 5.000000
COR: 180.000000 60.000000 7.939386 1.000000 1.000000 54.000000
COR: 240.000000 60.000000 0.662592 29.000000 62.000000 17.000000
COR: 300.000000 60.000000 0.631593 16.000000 47.000000 5.000000
COR: 360.000000 60.000000 7.939386 1.000000 1.000000 54.000000
COR: 0.000000 90.000000 15.875733 0.000000 1.000000 12.000000
CORMAX: 0.000000 -90.000000 15.875746 0.000000 1.000000 12.000000


-a 's data

Outdata-CorMode2-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-CorMode2-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.54771e-06 (32, 5, 24)

1.17132 (57, 32, 45)
0.00524255
0.0559389

0.000109256


CorMode=3

Output
COR: 0.000000 -90.000000 0.305786 0.000000 1.000000 61.000000
COR: 0.000000 -60.000000 0.191449 0.000000 0.000000 5.000000
COR: 60.000000 -60.000000 0.012832 31.000000 5.000000 0.000000
COR: 120.000000 -60.000000 0.013894 40.000000 0.000000 35.000000
COR: 180.000000 -60.000000 0.191449 0.000000 0.000000 5.000000
COR: 240.000000 -60.000000 0.012831 31.000000 5.000000 0.000000
COR: 300.000000 -60.000000 0.013894 40.000000 0.000000 35.000000
COR: 0.000000 -30.000000 0.241871 0.000000 0.000000 61.000000
COR: 34.641016 -30.000000 0.014061 60.000000 13.000000 21.000000
COR: 69.282032 -30.000000 0.012641 22.000000 61.000000 58.000000

...

COR: 346.410162 30.000000 0.019222 23.000000 39.000000 54.000000
COR: 0.000000 60.000000 0.186398 1.000000 1.000000 54.000000
COR: 60.000000 60.000000 0.014283 29.000000 62.000000 47.000000
COR: 120.000000 60.000000 0.014318 15.000000 46.000000 35.000000
COR: 180.000000 60.000000 0.186398 1.000000 1.000000 54.000000
COR: 240.000000 60.000000 0.014283 29.000000 62.000000 47.000000
COR: 300.000000 60.000000 0.014319 15.000000 46.000000 35.000000
COR: 360.000000 60.000000 0.186398 1.000000 1.000000 54.000000
COR: 0.000000 90.000000 0.305786 0.000000 1.000000 61.000000
CORMAX: 0.000000 -90.000000 0.305786 0.000000 1.000000 61.000000


-a 's data

Outdata-CorMode3-mrcImage3DSymmetryFind.png
xy-plane

Outdata1-CorMode3-mrcImage3DSymmetryFind.png
yz-plane

Min

Max
Mean
SD

SE

-4.54771e-06 (32, 5, 39)

1.17132 (57, 32, 15)
0.00524255
0.0559384

0.000109255


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