mrcImageMontageCreate

mrcImageMontageCreate is Eos's Command that creates a montage image from multiple images. (It adjusts the contrast of the images by averaging image.)

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: ASCII	NULL
-o	Essential	Output: mrcImage	NULL
-nx	Optional	ROI file's Num: x	10
-ny	Optional	ROI file's Num: y	10
-W	Optional	ROI file's Width	10
-H	Optional	ROI file's Height	10
-AW	Optional	AverageWindow for Pad	2000
-V	Optional	Addition value	0.0
-PM	Optional	PadMode	3
-EdgeAverage	Optional
-EdgeAverageWindow	Optional	Definition of Edge	4
-NoAverage	Optional
-Max	Optional	MaximumValue: If the pixel value is more than this max, the pixel value is assigned to the Value indicated by -V or -VMax.	16383
-VMax	Optional	Attention: related to -Max	16383
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0

-i format

hf0000.roi
hf0001.roi
..........
hf000n.roi

Execution example

Input file's data

/Eos/inputnoise-0000.roi
/Eos/inputnoise-0001.roi
/Eos/inputnoise-0002.roi
/Eos/inputnoise-0003.roi
/Eos/inputnoise-0004.roi
/Eos/inputnoise-0005.roi
/Eos/inputnoise-0006.roi
/Eos/inputnoise-0007.roi
/Eos/inputnoise-0008.roi
/Eos/inputnoise-0009.roi
/Eos/inputnoise-0010.roi
/Eos/inputnoise-0011.roi
/Eos/inputnoise-0012.roi
/Eos/inputnoise-0013.roi
/Eos/inputnoise-0014.roi
/Eos/inputnoise-0015.roi

ROI file used(Upper left → Upper right: 0000 - 0008、Lower left → Lower right: 0008 - 0015)

Example of options only essential

Min Max Mean SD SE

-133.274 (105, 21, 0) 176.036 (132, 0, 0) 13.9823 113.153 1.20485

Option -nx, -ny

Case: nx=4, ny=4

Min Max Mean SD SE

-133.274 (63, 63, 0) 176.036 (48, 21, 0) 17.4778 126.268 1.50319

Option -W, -H

Case: W=10, H=42, nx=4, ny=4

Min Max Mean SD SE

-133.274 (33, 130, 0) 176.036 (20, 50, 0) 13.3644 92.0112 1.15014

Option -V

Case: V=-16, nx=4, ny=4

Min Max Mean SD SE

-149.274 (63, 63, 0) 160.036 (48, 21, 0) 1.47782 126.268 1.50319

Option -PM

Case: PM=0, nx=4, ny=4

Min Max Mean SD SE

-168.927 (63, 0, 0) 160.828 (48, 21, 0) -1.21858e-06 124.739 1.48499

Option -NoAverage

Case: NoAverage, nx=4, ny=4

Min Max Mean SD SE

-143.846 (66, 21, 0) 174.773 (68, 1, 0) 17.4778 131.393 1.5642

Option -Max

Case: Max=150, nx=4, ny=4

Min Max Mean SD SE

-133.274 (63, 63, 0) 148.857 (26, 21, 0) 4.4666 118.645 1.41244

Option -VMax

Case: VMax=150, Max=150, nx=4, ny=4

Min Max Mean SD SE

-133.274 (63, 63, 0) 150 (47, 21, 0) 16.2863 124.917 1.48711