「mrcImage(API)」の版間の差分

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行2: 行2:
  
 
==定数==
 
==定数==
−
===Status Mask===
+
===マスク処理===
 
  typedef unsigned int mrcStatusMask;
 
  typedef unsigned int mrcStatusMask;
 
  typedef unsigned int mrcStatusType;
 
  typedef unsigned int mrcStatusType;
行22: 行22:
 
  #define  mrcStatusMask_ReferMemory  ((mrcStatusMask)0x00020000L)
 
  #define  mrcStatusMask_ReferMemory  ((mrcStatusMask)0x00020000L)
 
  #define  mrcStatusMask_ReferFile    ((mrcStatusMask)0x00010000L)
 
  #define  mrcStatusMask_ReferFile    ((mrcStatusMask)0x00010000L)
−
+
 
 +
===mrcファイルの状態===
 
  #define  MRC_Status_OK              ((mrcStatusType)0x00000000L)
 
  #define  MRC_Status_OK              ((mrcStatusType)0x00000000L)
 
   
 
   
行41: 行42:
 
  extern char* mrcImageGeneralTypeList[];
 
  extern char* mrcImageGeneralTypeList[];
  
−
=== MRC Image Header===
+
===ヘッダ情報===
 
====Header Size====
 
====Header Size====
 
  #define MRC_HEADER (1024)
 
  #define MRC_HEADER (1024)
行47: 行48:
  
 
====Image Data Type====
 
====Image Data Type====
−
/* for compatibility */
+
=====for compatibility=====
−
  typedef mrcImageParaTypeInteger mrcImageMode;
+
  typedef mrcImageParaTypeInteger mrcImageMode;
−
  #define MRC_char_image     ((mrcImageMode)0)
+
  #define MRC_char_image     ((mrcImageMode)0)
 
  #define MRC_short_image     ((mrcImageMode)1)
 
  #define MRC_short_image     ((mrcImageMode)1)
 
  #define MRC_float_image     ((mrcImageMode)2)
 
  #define MRC_float_image     ((mrcImageMode)2)
行62: 行63:
 
  #define MRC_complex_long_fft    ((mrcImageMode)1103)
 
  #define MRC_complex_long_fft    ((mrcImageMode)1103)
 
  #define MRC_complex_double_fft  ((mrcImageMode)1104)
 
  #define MRC_complex_double_fft  ((mrcImageMode)1104)
−
  #define MRC_NotSuppotedMode      ((mrcImageMode)0xffffffffL)
+
  #define MRC_NotSuppotedMode      ((mrcImageMode)0xffffffffL)
−
+
 
−
  #define mrcCharImage     ((mrcImageMode)0)
+
  #define mrcCharImage     ((mrcImageMode)0)
 
  #define mrcShortImage     ((mrcImageMode)1)
 
  #define mrcShortImage     ((mrcImageMode)1)
 
  #define mrcFloatImage     ((mrcImageMode)2)
 
  #define mrcFloatImage     ((mrcImageMode)2)
行70: 行71:
 
  #define mrcComplexFloatFT        ((mrcImageMode)4)
 
  #define mrcComplexFloatFT        ((mrcImageMode)4)
 
  #define mrcComplexFloatOneDimFT  ((mrcImageMode)5)
 
  #define mrcComplexFloatOneDimFT  ((mrcImageMode)5)
−
// Change of IMOD  
+
 
 +
=====Change of IMOD=====
 
  #define mrcUShortImage          ((mrcImageMode)6)
 
  #define mrcUShortImage          ((mrcImageMode)6)
 
  #define mrcCharImageRGB          ((mrcImageMode)16)
 
  #define mrcCharImageRGB          ((mrcImageMode)16)
−
// Change for IMOD: (6,7) -> (26,27)  
+
 
 +
=====Change for IMOD: (6,7) -> (26,27)=====
 
  #define mrcFloatRadonImage      ((mrcImageMode)26)
 
  #define mrcFloatRadonImage      ((mrcImageMode)26)
 
  #define mrcFloatRadonFT          ((mrcImageMode)27)
 
  #define mrcFloatRadonFT          ((mrcImageMode)27)
行84: 行87:
 
  #define mrcComplexLongFFT        ((mrcImageMode)1103)
 
  #define mrcComplexLongFFT        ((mrcImageMode)1103)
 
  #define mrcComplexDoubleFFT      ((mrcImageMode)1104)
 
  #define mrcComplexDoubleFFT      ((mrcImageMode)1104)
−
  #define mrcNotSuppotedMode      ((mrcImageMode)0xffffffffL)
+
  #define mrcNotSuppotedMode      ((mrcImageMode)0xffffffffL)
−
+
 
 
  #define MRC_MAX_LABEL_N    (10)
 
  #define MRC_MAX_LABEL_N    (10)
 
  #define MRC_MAX_LABEL_LEN  (80)
 
  #define MRC_MAX_LABEL_LEN  (80)
行91: 行94:
 
  #define MRC_MAX_EXTRA_CCP4 (15)
 
  #define MRC_MAX_EXTRA_CCP4 (15)
  
−
===Tailer===
+
===トレイラ情報===
 
  #define  mrcImageTailerMode2DProjection 0
 
  #define  mrcImageTailerMode2DProjection 0
  
行97: 行100:
 
  typedef enum mrcImageInformationMode {
 
  typedef enum mrcImageInformationMode {
 
  meanOfAll            = 0,
 
  meanOfAll            = 0,
−
    meanOfSphereSurface  = 1,
+
meanOfSphereSurface  = 1,
−
    meanOfCylinderSurface = 2,
+
meanOfCylinderSurface = 2,
−
    meanOfEdge            = 3,  
+
meanOfEdge            = 3,  
−
    meanOfCentre          = 4,
+
meanOfCentre          = 4,
−
    meanOfSparse          = 5,
+
meanOfSparse          = 5,
 
  meanOf2DEdgeY        = 6,
 
  meanOf2DEdgeY        = 6,
 
  RMSofAllPixels      = 7
 
  RMSofAllPixels      = 7
行115: 行118:
 
     mrcPixelPhase
 
     mrcPixelPhase
 
  } mrcPixelDataType;
 
  } mrcPixelDataType;
−
+
 
 
  typedef enum mrcPixelDataHowToGet {
 
  typedef enum mrcPixelDataHowToGet {
 
     mrcPixelHowNearest = 0,
 
     mrcPixelHowNearest = 0,
行124: 行127:
  
 
==構造体==
 
==構造体==
−
===Status Mask===
+
===マスク処理===
 
  typedef union MRC_Status_t {
 
  typedef union MRC_Status_t {
 
     mrcStatusType all;
 
     mrcStatusType all;
行149: 行152:
 
  typedef unsigned char mrcImageParaTypeCharacter;
 
  typedef unsigned char mrcImageParaTypeCharacter;
  
 +
座標情報(int)
 
  typedef struct mrcImageParaTypeIntegerCoord {
 
  typedef struct mrcImageParaTypeIntegerCoord {
 
  mrcImageParaTypeInteger x;
 
  mrcImageParaTypeInteger x;
行155: 行159:
 
  } mrcImageParaTypeIntegerCoord;
 
  } mrcImageParaTypeIntegerCoord;
  
 +
座標情報(実数)
 
  typedef struct mrcImageParaTypeRealCoord {
 
  typedef struct mrcImageParaTypeRealCoord {
 
  mrcImageParaTypeReal x;
 
  mrcImageParaTypeReal x;
行160: 行165:
 
  mrcImageParaTypeReal z;
 
  mrcImageParaTypeReal z;
 
  } mrcImageParaTypeRealCoord;
 
  } mrcImageParaTypeRealCoord;
−
+
 
−
=== MRC Image Header===
+
===ヘッダ情報===
 +
====デフォルト====
 
  typedef struct _mrcImageHeader {
 
  typedef struct _mrcImageHeader {
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
行180: 行186:
 
  mrcImageParaTypeInteger            NSYMBT; /* Number of bytes */
 
  mrcImageParaTypeInteger            NSYMBT; /* Number of bytes */
 
  mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA]; /* Extra, user defined storage space */
 
  mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA]; /* Extra, user defined storage space */
−
    mrcImageParaTypeReal                OriginX;
+
mrcImageParaTypeReal                OriginX;
−
    mrcImageParaTypeReal                OriginY;
+
mrcImageParaTypeReal                OriginY;
−
    mrcImageParaTypeInteger            LabelN;
+
mrcImageParaTypeInteger            LabelN;
−
    char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
+
char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
 
  } _mrcImageHeader;
 
  } _mrcImageHeader;
 
   
 
   
−
/* For CCP4 2000 : Current New */
+
====CCP4 2000====
 
  typedef struct _mrcImageHeaderCCP4 {
 
  typedef struct _mrcImageHeaderCCP4 {
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
行208: 行214:
 
  mrcImageParaTypeReal SKWTRN[3]; /* Skew translation */
 
  mrcImageParaTypeReal SKWTRN[3]; /* Skew translation */
 
  mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA_CCP4]; /* Extra, user defined storage space */
 
  mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA_CCP4]; /* Extra, user defined storage space */
−
    mrcImageParaTypeCharacter  MAP[4];
+
mrcImageParaTypeCharacter  MAP[4];
−
    mrcImageParaTypeInteger  MARCHST;
+
mrcImageParaTypeInteger  MARCHST;
−
    mrcImageParaTypeReal                ARMS;
+
mrcImageParaTypeReal                ARMS;
−
    mrcImageParaTypeInteger            LabelN;
+
mrcImageParaTypeInteger            LabelN;
−
    char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
+
char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
 
  } _mrcImageHeaderCCP4;
 
  } _mrcImageHeaderCCP4;
 
   
 
   
−
/* For IMOD: Current New */
+
====IMOD====
 
  typedef struct _mrcImageHeaderIMOD {
 
  typedef struct _mrcImageHeaderIMOD {
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
 
  mrcImageParaTypeIntegerCoord        N;     /* Data Numbers */
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  mrcImageParaTypeReal                yorg; /* Extra, user defined storage space */
 
  mrcImageParaTypeReal                yorg; /* Extra, user defined storage space */
 
  mrcImageParaTypeReal                zorg; /* Extra, user defined storage space */
 
  mrcImageParaTypeReal                zorg; /* Extra, user defined storage space */
−
    mrcImageParaTypeCharacter  MAP[4];
+
mrcImageParaTypeCharacter  MAP[4];
−
    mrcImageParaTypeInteger  MARCHST;
+
mrcImageParaTypeInteger  MARCHST;
−
    mrcImageParaTypeReal                ARMS;
+
mrcImageParaTypeReal                ARMS;
−
    mrcImageParaTypeInteger            LabelN;
+
mrcImageParaTypeInteger            LabelN;
−
    char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
+
char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
 
  } _mrcImageHeaderIMOD;
 
  } _mrcImageHeaderIMOD;
−
+
 
−
+
====共用体====
 
  typedef union mrcImageHeader {
 
  typedef union mrcImageHeader {
 
   unsigned char          All[MRC_HEADER];
 
   unsigned char          All[MRC_HEADER];
行267: 行273:
 
  } mrcImageHeader;
 
  } mrcImageHeader;
 
   
 
   
−
   
+
  ====FEI====
 
  #define FEI_EXTENDED_HEADER_EACH (128)  
 
  #define FEI_EXTENDED_HEADER_EACH (128)  
 
   
 
   
行299: 行305:
 
  } FEIextendedHeader;
 
  } FEIextendedHeader;
  
−
===Tailer===
+
===トレイラ情報===
 
  typedef struct _mrcImageTailer {
 
  typedef struct _mrcImageTailer {
 
  char                Code[4];  
 
  char                Code[4];  
行309: 行315:
 
  mrcImageParaTypeInteger Mirror;
 
  mrcImageParaTypeInteger Mirror;
 
  } _mrcImageTailer;
 
  } _mrcImageTailer;
−
+
 
−
+
 
  typedef union mrcImageTailer {
 
  typedef union mrcImageTailer {
 
   unsigned char          All[MRC_TAILER];
 
   unsigned char          All[MRC_TAILER];
行317: 行322:
 
   _mrcImageTailer        Cont;
 
   _mrcImageTailer        Cont;
 
  } mrcImageTailer;
 
  } mrcImageTailer;
−
+
 
−
+
 
  typedef char mrcImageSymmetryOperator;
 
  typedef char mrcImageSymmetryOperator;
  
−
===mrcImage Structure===
+
===[[mrcImage]]の構造===
 
  typedef struct mrcImage {
 
  typedef struct mrcImage {
−
    mrcImageHeader          Header;
+
mrcImageHeader          Header;
−
    size_t BytePerImage;
+
size_t BytePerImage;
−
    mrcImageParaTypeInteger BytePerBand;
+
mrcImageParaTypeInteger BytePerBand;
−
    mrcImageParaTypeInteger BandPerPixel;
+
mrcImageParaTypeInteger BandPerPixel;
−
    size_t PixelPerImage;
+
size_t PixelPerImage;
−
    mrcStatusType          status;
+
mrcStatusType          status;
−
    char*          Image;
+
char*          Image;
−
    unsigned char*  ImageCharImage;
+
unsigned char*  ImageCharImage;
−
    unsigned short* ImageShortImage;
+
unsigned short* ImageShortImage;
−
    unsigned long*  ImageLongImage;
+
unsigned long*  ImageLongImage;
−
    float*          ImageFloatImage;
+
float*          ImageFloatImage;
−
    double*        ImageDoubleImage;
+
double*        ImageDoubleImage;
 
   
 
   
 
  /* Tailer */
 
  /* Tailer */
行356: 行360:
 
  mrcImageSymmetryOperator* SymmetryOperator;
 
  mrcImageSymmetryOperator* SymmetryOperator;
 
  } mrcImage;
 
  } mrcImage;
−
+
 
 +
===[[mrcImage]]の情報===
 
  typedef struct mrcImageInformation {
 
  typedef struct mrcImageInformation {
−
    double mean;
+
double mean;
−
    double rootMeanSquare;
+
double rootMeanSquare;
−
    double meanOfSphereSurface;
+
double meanOfSphereSurface;
−
    double sdOfSphereSurface;
+
double sdOfSphereSurface;
−
    double seOfSphereSurface;
+
double seOfSphereSurface;
−
    double meanOfCylinderSurface;
+
double meanOfCylinderSurface;
−
    double sdOfCylinderSurface;
+
double sdOfCylinderSurface;
−
    double seOfCylinderSurface;
+
double seOfCylinderSurface;
−
    double meanOfEdge;
+
double meanOfEdge;
−
    double sdOfEdge;
+
double sdOfEdge;
−
    double seOfEdge;
+
double seOfEdge;
−
    double max;
+
double max;
 
  mrcImageParaTypeRealCoord maxCoord;
 
  mrcImageParaTypeRealCoord maxCoord;
−
    double min;
+
double min;
 
  mrcImageParaTypeRealCoord minCoord;
 
  mrcImageParaTypeRealCoord minCoord;
−
    double sd;
+
double sd;
−
    double se;
+
double se;
 
  double rmax;
 
  double rmax;
 
  long flagrmax;
 
  long flagrmax;
行397: 行402:
 
  } mrcImageInformation;
 
  } mrcImageInformation;
  
 +
===メンバー呼び出しの省略表記を定義===
 
  #define HeaderN      Header.Cont.N       
 
  #define HeaderN      Header.Cont.N       
 
  #define HeaderMode    Header.Cont.Mode     
 
  #define HeaderMode    Header.Cont.Mode     
行607: 行613:
 
        mrcPixelDataType mode);
 
        mrcPixelDataType mode);
  
−
====インライン型関数の画素データの取得====
+
====インライン型関数の画素データの設定====
 
  extern double mrcPixelDataSet(mrcImage* mrc,
 
  extern double mrcPixelDataSet(mrcImage* mrc,
 
        mrcImageParaTypeReal x /* Pixel Unit */,
 
        mrcImageParaTypeReal x /* Pixel Unit */,
行681: 行687:
 
  extern int mrcImageByteSwap(mrcImage* mrc, long mode);
 
  extern int mrcImageByteSwap(mrcImage* mrc, long mode);
  
−
===mrcImageInfo===
+
===投影===
 
  extern void lmrcImageXSection(mrcImage* proj, mrcImage* img, double Y);
 
  extern void lmrcImageXSection(mrcImage* proj, mrcImage* img, double Y);
 
  extern void lmrcImageYSection(mrcImage* proj, mrcImage* img, double X);
 
  extern void lmrcImageYSection(mrcImage* proj, mrcImage* img, double X);
行700: 行706:
 
  extern void lmrcImageInformation(mrcImageInformation* info, mrcImage* img);
 
  extern void lmrcImageInformation(mrcImageInformation* info, mrcImage* img);
  
−
===mrcImageCopy===
+
===データコピー(mrcImageCopy)===
 
  extern void lmrcImageCopy(mrcImage* dst, mrcImage* src, mrcImageParaTypeRealCoord to);
 
  extern void lmrcImageCopy(mrcImage* dst, mrcImage* src, mrcImageParaTypeRealCoord to);
  
−
===mrcUtil===
+
===画像モードのチェック===
 
  extern int IsFloatImage(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFloatImage(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFloatFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFloatFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
行709: 行715:
 
  extern int IsFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 
  extern int IsFFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
 +
 +
===画像情報の設定===
 
  extern void mrcImageInfoSet(mrcImage* mrc, FILE* fptIn, FILE* fptOut, long mode);
 
  extern void mrcImageInfoSet(mrcImage* mrc, FILE* fptIn, FILE* fptOut, long mode);
  
 
===mrcImageToIntImage===
 
===mrcImageToIntImage===
 
  extern void lmrcImageToIntImage(mrcImage* dst, mrcImage* src, mrcImageParaTypeInteger mode);
 
  extern void lmrcImageToIntImage(mrcImage* dst, mrcImage* src, mrcImageParaTypeInteger mode);
−
+
 
 +
===FFT関連===
 
  extern void lfft2d(mrcImage* fft, mrcImage* img);
 
  extern void lfft2d(mrcImage* fft, mrcImage* img);
 
   
 
   

2014年5月13日 (火) 06:11時点における版

DataManip/mrcImageは、mrcImage型の画像を取り扱うための低水準APIです。

目次

定数

マスク処理

typedef unsigned int mrcStatusMask;
typedef unsigned int mrcStatusType;

#define  mrcStatusMask_ExitFailure  ((mrcStatusMask)0x80000000L)
#define  mrcStatusMask_Warning      ((mrcStatusMask)0x40000000L)
#define  mrcStatusMask_Information  ((mrcStatusMask)0x20000000L)
#define  mrcStatusMask_Message      ((mrcStatusMask)0x10000000L)
#define  mrcStatusMask_1B           ((mrcStatusMask)0x08000000L)
#define  mrcStatusMask_1A           ((mrcStatusMask)0x04000000L)
#define  mrcStatusMask_19           ((mrcStatusMask)0x02000000L)
#define  mrcStatusMask_18           ((mrcStatusMask)0x01000000L)
#define  mrcStatusMask_17           ((mrcStatusMask)0x00800000L)
#define  mrcStatusMask_16           ((mrcStatusMask)0x00400000L)
#define  mrcStatusMask_15           ((mrcStatusMask)0x00200000L)
#define  mrcStatusMask_14           ((mrcStatusMask)0x00100000L)
#define  mrcStatusMask_ReferMRCInfo ((mrcStatusMask)0x00080000L)
#define  mrcStatusMask_Mode         ((mrcStatusMask)0x00040000L)
#define  mrcStatusMask_ReferMemory  ((mrcStatusMask)0x00020000L)
#define  mrcStatusMask_ReferFile    ((mrcStatusMask)0x00010000L)

mrcファイルの状態

#define  MRC_Status_OK              ((mrcStatusType)0x00000000L)

#define  MRC_FileCanNotOpened       ((mrcStatusType)0x00000000L|mrcStatusMask_ReferFile)
#define  MRC_ImageHeaderCanNotRead  ((mrcStatusType)0x00000001L|mrcStatusMask_ReferFile)
#define  MRC_ImageDataCanNotRead    ((mrcStatusType)0x00000002L|mrcStatusMask_ReferFile)
#define  MRC_ImageHeaderCanNotWrite ((mrcStatusType)0x00000003L|mrcStatusMask_ReferFile)
#define  MRC_ImageDataCanNotWrite   ((mrcStatusType)0x00000004L|mrcStatusMask_ReferFile)
#define  MRC_FileCanNotClosed       ((mrcStatusType)0x00000005L|mrcStatusMask_ReferFile)

#define  MRC_MemoryNotAllocate      ((mrcStatusType)0x00000000L|mrcStatusMask_ReferMemory)

#define  MRC_ModeNotSupported       ((mrcStatusType)0x00000000L|mrcStatusMask_Mode)
#define  MRC_ModeZNot1FFTMode       ((mrcStatusType)0x00000001L|mrcStatusMask_Mode)

#define  MRC_SizeOfZero             ((mrcStatusType)0x00000000L|mrcStatusMask_ReferMRCInfo)

extern char* mrcImageGeneralTypeList[];

ヘッダ情報

Header Size

#define MRC_HEADER (1024)
#define MRC_TAILER (1024)

Image Data Type

for compatibility
typedef	mrcImageParaTypeInteger mrcImageMode;
#define	MRC_char_image	    	 ((mrcImageMode)0)
#define	MRC_short_image	    	 ((mrcImageMode)1)
#define	MRC_float_image	    	 ((mrcImageMode)2)
#define	MRC_complex_short_ft     ((mrcImageMode)3)
#define	MRC_complex_float_ft     ((mrcImageMode)4)
#define	MRC_long_image	         ((mrcImageMode)101)
#define	MRC_double_image	     ((mrcImageMode)102)
#define	MRC_complex_long_ft      ((mrcImageMode)103)
#define	MRC_complex_double_ft    ((mrcImageMode)104)
#define	MRC_complex_short_fft    ((mrcImageMode)1003)
#define	MRC_complex_float_fft    ((mrcImageMode)1004)
#define	MRC_complex_long_fft     ((mrcImageMode)1103)
#define	MRC_complex_double_fft   ((mrcImageMode)1104)
#define	MRC_NotSuppotedMode      ((mrcImageMode)0xffffffffL)

#define	mrcCharImage	    	 ((mrcImageMode)0)
#define	mrcShortImage	    	 ((mrcImageMode)1)
#define	mrcFloatImage	    	 ((mrcImageMode)2)
#define	mrcComplexShortFT        ((mrcImageMode)3)
#define	mrcComplexFloatFT        ((mrcImageMode)4)
#define	mrcComplexFloatOneDimFT  ((mrcImageMode)5)
Change of IMOD
#define	mrcUShortImage           ((mrcImageMode)6)
#define	mrcCharImageRGB          ((mrcImageMode)16)
Change for IMOD: (6,7) -> (26,27)
#define	mrcFloatRadonImage       ((mrcImageMode)26)
#define	mrcFloatRadonFT          ((mrcImageMode)27)
#define	mrcLongImage	         ((mrcImageMode)101)
#define	mrcDoubleImage	         ((mrcImageMode)102)
#define	mrcComplexLongFT         ((mrcImageMode)103)
#define	mrcComplexDoubleFT       ((mrcImageMode)104)
#define	mrcComplexShortFFT       ((mrcImageMode)1003)
#define	mrcComplexFloatFFT       ((mrcImageMode)1004)
#define	mrcComplexLongFFT        ((mrcImageMode)1103)
#define	mrcComplexDoubleFFT      ((mrcImageMode)1104)
#define	mrcNotSuppotedMode       ((mrcImageMode)0xffffffffL)

#define MRC_MAX_LABEL_N    (10)
#define MRC_MAX_LABEL_LEN  (80)
#define MRC_MAX_EXTRA      (29)
#define MRC_MAX_EXTRA_CCP4 (15)

トレイラ情報

#define  mrcImageTailerMode2DProjection 0

画像情報

typedef enum mrcImageInformationMode {
	meanOfAll             = 0,
	meanOfSphereSurface   = 1,
	meanOfCylinderSurface = 2,
	meanOfEdge            = 3, 
	meanOfCentre          = 4,
	meanOfSparse          = 5,
	meanOf2DEdgeY         = 6,
	RMSofAllPixels       = 7
} mrcImageInformationMode;

typedef enum mrcPixelDataType {
    mrcPixelRePart = 0,
    mrcPixelImPart,
    mrcPixelMag,
    mrcPixelPow,
    mrcPixelLogMag,
    mrcPixelLogPow,
    mrcPixelPhase
} mrcPixelDataType;

typedef enum mrcPixelDataHowToGet {
    mrcPixelHowNearest = 0,
    mrcPixelHowLinear,
    mrcPixelHowCubicConv,
    mrcPixelHowPolySig
} mrcPixelDataHowToGet;

構造体

マスク処理

typedef union MRC_Status_t {
   mrcStatusType all;
   struct Content {
#ifdef M68
       unsigned char level;
       unsigned char category;
       short detail;
#else
       short detail;
       unsigned char category;
       unsigned char level;
#endif
	} status;
} MRC_Status_t;

#ifdef M68
typedef int mrcImageParaTypeInteger;
#else
typedef int mrcImageParaTypeInteger;
#endif

typedef float mrcImageParaTypeReal;
typedef unsigned char mrcImageParaTypeCharacter;

座標情報(int) 

typedef struct mrcImageParaTypeIntegerCoord {
	mrcImageParaTypeInteger x;
	mrcImageParaTypeInteger y;
	mrcImageParaTypeInteger z;
} mrcImageParaTypeIntegerCoord;

座標情報(実数) 

typedef struct mrcImageParaTypeRealCoord {
	mrcImageParaTypeReal x;
	mrcImageParaTypeReal y;
	mrcImageParaTypeReal z;
} mrcImageParaTypeRealCoord;

ヘッダ情報

デフォルト

typedef struct _mrcImageHeader {
	mrcImageParaTypeIntegerCoord        N;	    /* Data Numbers */
	mrcImageMode                        Mode;   /* Data Type */
	mrcImageParaTypeIntegerCoord        StartN; /* First in map */
	mrcImageParaTypeIntegerCoord        M;	    /* Number of Intervals */
	mrcImageParaTypeRealCoord           Length; /* Cell Dimensions : Angstrom */
	mrcImageParaTypeReal                Alpha;  /* Cell Angle : Degree */
	mrcImageParaTypeReal                Beta;
	mrcImageParaTypeReal                Gamma;
	mrcImageParaTypeInteger             MAPC;   /* Which Axis Corresponds to Columns */
	mrcImageParaTypeInteger             MAPR;   /* Which Axis Corresponds to Rows */
	mrcImageParaTypeInteger             MAPS;   /* Which Axis Corresponds to Sections */
	mrcImageParaTypeReal                AMin;   /* Minimum Density Value */
	mrcImageParaTypeReal                AMax;   /* Maximum Density Value */
	mrcImageParaTypeReal                AMean;  /* Mean Density Value */
	mrcImageParaTypeInteger             ISPG;   /* Space Group */
	mrcImageParaTypeInteger             NSYMBT; /* Number of bytes */
	mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA]; /* Extra, user defined storage space */
	mrcImageParaTypeReal                OriginX;
	mrcImageParaTypeReal                OriginY;
	mrcImageParaTypeInteger             LabelN;
	char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
} _mrcImageHeader;

CCP4 2000

typedef struct _mrcImageHeaderCCP4 {
	mrcImageParaTypeIntegerCoord        N;	    /* Data Numbers */
	mrcImageMode                        Mode;   /* Data Type */
	mrcImageParaTypeIntegerCoord        StartN; /* First in map */
	mrcImageParaTypeIntegerCoord        NI;	    /* Number of Intervals */
	mrcImageParaTypeRealCoord           Length; /* Cell Dimensions : Angstrom */
	mrcImageParaTypeReal                Alpha;  /* Cell Angle : Degree */
	mrcImageParaTypeReal                Beta;
	mrcImageParaTypeReal                Gamma;
	mrcImageParaTypeInteger             MAPC;   /* Which Axis Corresponds to Columns */
	mrcImageParaTypeInteger             MAPR;   /* Which Axis Corresponds to Rows */
	mrcImageParaTypeInteger             MAPS;   /* Which Axis Corresponds to Sections */
	mrcImageParaTypeReal                AMin;   /* Minimum Density Value */
	mrcImageParaTypeReal                AMax;   /* Maximum Density Value */
	mrcImageParaTypeReal                AMean;  /* Mean Density Value */
	mrcImageParaTypeInteger             ISPG;   /* Space Group */
	mrcImageParaTypeInteger             NSYMBT; /* Number of bytes used for storing symmetry operators */
	mrcImageParaTypeInteger             LSKFLG; /* Flag for Skew transformation */
	mrcImageParaTypeReal 				SKWMAT[9]; /* Skew matrix S */
	mrcImageParaTypeReal 				SKWTRN[3]; /* Skew translation */
	mrcImageParaTypeReal                EXTRA[MRC_MAX_EXTRA_CCP4]; /* Extra, user defined storage space */
	mrcImageParaTypeCharacter  			MAP[4];
	mrcImageParaTypeInteger  			MARCHST;
	mrcImageParaTypeReal                ARMS;
	mrcImageParaTypeInteger             LabelN;
	char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
} _mrcImageHeaderCCP4;

IMOD

typedef struct _mrcImageHeaderIMOD {
	mrcImageParaTypeIntegerCoord        N;	    /* Data Numbers */
	mrcImageMode                        Mode;   /* Data Type */
	mrcImageParaTypeIntegerCoord        StartN; /* First in map */
	mrcImageParaTypeIntegerCoord        M;	    /* Number of Intervals */
	mrcImageParaTypeRealCoord           Length; /* PixelSize=Len/M: Angstrom */
	mrcImageParaTypeReal                Alpha;  /* Cell Angle : Degree */
	mrcImageParaTypeReal                Beta;
	mrcImageParaTypeReal                Gamma;
	mrcImageParaTypeInteger             MAPC;   /* Which Axis Corresponds to Columns */
	mrcImageParaTypeInteger             MAPR;   /* Which Axis Corresponds to Rows */
	mrcImageParaTypeInteger             MAPS;   /* Which Axis Corresponds to Sections */
	mrcImageParaTypeReal                AMin;   /* Minimum Density Value */
	mrcImageParaTypeReal                AMax;   /* Maximum Density Value */
	mrcImageParaTypeReal                AMean;  /* Mean Density Value */
	mrcImageParaTypeInteger             ISPG;   /* Space Group */
	mrcImageParaTypeInteger             NSYMBT; /* Number of bytes used for extended header */
	short                               creatid; /* Flag for Skew transformation */
	short                               extra1[15]; /* Flag for Skew transformation */
	short                               nint;
	short                               nreal; /*l Skew matrix S */
	mrcImageParaTypeReal                extra2[5]; /* Extra, user defined storage space */
	mrcImageParaTypeInteger             imodStamp;   
	mrcImageParaTypeInteger             imodFlags;   
	short                               idtype;   
	short                               lnes;   
	short                               nd1;   
	short                               nd2;   
	short                               vd1;   
	short                               vd2;   
	mrcImageParaTypeReal                tiltangles[6]; /* Extra, user defined storage space */
	mrcImageParaTypeReal                xorg; /* Extra, user defined storage space */
	mrcImageParaTypeReal                yorg; /* Extra, user defined storage space */
	mrcImageParaTypeReal                zorg; /* Extra, user defined storage space */
	mrcImageParaTypeCharacter  			MAP[4];
	mrcImageParaTypeInteger  			MARCHST;
	mrcImageParaTypeReal                ARMS;
	mrcImageParaTypeInteger             LabelN;
	char                                Label[MRC_MAX_LABEL_N][MRC_MAX_LABEL_LEN];
} _mrcImageHeaderIMOD;

共用体

typedef union mrcImageHeader {
  unsigned char           All[MRC_HEADER];
  mrcImageParaTypeInteger Int[MRC_HEADER/4];
  mrcImageParaTypeReal    Real[MRC_HEADER/4];
  _mrcImageHeader         Cont;
  _mrcImageHeaderCCP4     ContCCP4;
  _mrcImageHeaderIMOD     ContIMOD;
} mrcImageHeader;

====FEI====
#define FEI_EXTENDED_HEADER_EACH (128) 

typedef struct _FEIextendedHeader {
	mrcImageParaTypeReal aTilt;   // Alpha tilt, in degrees
	mrcImageParaTypeReal bTilt;   // Beta tilt, in degrees 
	mrcImageParaTypeReal xStage;  // Stage x position. 
								  // Normally in SI units (meters), 
								  // but some older files may be in micrometers. 
								  // Check by looking at values for x,y,z. 
								  // If one of these exceeds 1, it will be micrometers.
	mrcImageParaTypeReal yStage;  // Stage y position. For testing of units see x_stage.
	mrcImageParaTypeReal zStage;  // Stage z position. For testing of units see x_stage.
	mrcImageParaTypeReal xShift;  // Image shift x. For testing of units see x_stage.
	mrcImageParaTypeReal yShift;  // Image shift y. For testing of units see x_stage.
	mrcImageParaTypeReal defocus;  
	mrcImageParaTypeReal expTime;  
	mrcImageParaTypeReal mean;  
	mrcImageParaTypeReal tiltAxis;  
	mrcImageParaTypeReal pixelSize;  
	mrcImageParaTypeReal magnification;  
	mrcImageParaTypeReal ht;  
	mrcImageParaTypeReal binning;  
	mrcImageParaTypeReal appliedDefocus;  
	mrcImageParaTypeReal reminder[FEI_EXTENDED_HEADER_EACH/4-16];  
} _FEIextendedHeader;

typedef union FEIextendedHeader {
	mrcImageParaTypeReal Real[FEI_EXTENDED_HEADER_EACH/4];
	_FEIextendedHeader   Cont;
} FEIextendedHeader;

トレイラ情報

typedef struct _mrcImageTailer {
	char                 		Code[4]; 
	mrcImageParaTypeInteger		Mode;  
	char                        EulerAngleMode[4];
	mrcImageParaTypeReal 		Rot1;   
	mrcImageParaTypeReal 		Rot2;
	mrcImageParaTypeReal 		Rot3;
	mrcImageParaTypeInteger 	Mirror;
} _mrcImageTailer;

typedef union mrcImageTailer {
  unsigned char           All[MRC_TAILER];
  mrcImageParaTypeInteger Int[MRC_TAILER/4];
  mrcImageParaTypeReal    Real[MRC_TAILER/4];
  _mrcImageTailer         Cont;
} mrcImageTailer;

typedef char mrcImageSymmetryOperator;

mrcImageの構造

typedef struct mrcImage {
	mrcImageHeader          Header;
	size_t BytePerImage;
	mrcImageParaTypeInteger BytePerBand;
	mrcImageParaTypeInteger BandPerPixel;
	size_t PixelPerImage;
	mrcStatusType           status;
	char*           Image;
	unsigned char*  ImageCharImage;
	unsigned short* ImageShortImage;
	unsigned long*  ImageLongImage;
	float*          ImageFloatImage;
	double*         ImageDoubleImage;

	/* Tailer */
	mrcImageTailer*         Tailer;	
	mrcImageParaTypeInteger numTailer;

	/* FEIextendedHeader */
	FEIextendedHeader*      FEIHeader;
	mrcImageParaTypeInteger numFEIHeader;

 	/* Dummy */
	char*     dummyHeader;
	mrcImageParaTypeInteger dummyHeaderByte;

	/* Swap Bytes */
	mrcImageParaTypeInteger flagByteSwap;

	/* flag CCP4-2000 */
	mrcImageParaTypeInteger   flagCCP4;
	mrcImageParaTypeInteger   ImageOffset; 
	mrcImageSymmetryOperator* SymmetryOperator;
} mrcImage;

mrcImageの情報

typedef struct mrcImageInformation {
	double mean;
	double rootMeanSquare;
	double meanOfSphereSurface;
	double sdOfSphereSurface;
	double seOfSphereSurface;
	double meanOfCylinderSurface;
	double sdOfCylinderSurface;
	double seOfCylinderSurface;
	double meanOfEdge;
	double sdOfEdge;
	double seOfEdge;
	double max;
	mrcImageParaTypeRealCoord maxCoord;
	double min;
	mrcImageParaTypeRealCoord minCoord;
	double sd;
	double se;
	double rmax;
	long flagrmax;
	double RMS; /* Root mean square */
	int mode;

	/* For Search Area */
	int flagXrange;
	int flagYrange;
	int flagZrange;
	double XrangeMin; 
	double XrangeMax; 
	double YrangeMin; 
	double YrangeMax; 
	double ZrangeMin; 
	double ZrangeMax; 

	int flagCentre;
	double CentreX;
	double CentreY;
	double CentreZ;
} mrcImageInformation;

メンバー呼び出しの省略表記を定義

#define HeaderN       Header.Cont.N       
#define HeaderMode    Header.Cont.Mode    
#define HeaderStartN  Header.Cont.StartN  
#define HeaderM       Header.Cont.M       
#define HeaderLength  Header.Cont.Length  
#define HeaderAlpha   Header.Cont.Alpha   
#define HeaderBeta    Header.Cont.Beta    
#define HeaderGamma   Header.Cont.Gamma   
#define HeaderMAPC    Header.Cont.MAPC    
#define HeaderMAPR    Header.Cont.MAPR    
#define HeaderMAPS    Header.Cont.MAPS    
#define HeaderAMin    Header.Cont.AMin    
#define HeaderAMax    Header.Cont.AMax    
#define HeaderAMean   Header.Cont.AMean   
#define HeaderISPG    Header.Cont.ISPG    
#define HeaderNSYMBT  Header.Cont.NSYMBT  
#define HeaderLSKFLG  Header.ContCCP4.LSKFLG
#define HeaderEXTRA   Header.Cont.EXTRA
#define HeaderOriginX Header.Cont.OriginX 
#define HeaderOriginY Header.Cont.OriginY  
#define HeaderLabelN  Header.Cont.LabelN
#define HeaderLabel   Header.Cont.Label

画像情報

typedef struct lmrcImageSmoothingInfo  {
	long mode;
	mrcImageParaTypeReal sx; /* Filter kernel size */
	mrcImageParaTypeReal sy;
	mrcImageParaTypeReal sz;
	double sigma;            /* for Lee-Sigma filter  */
} lmrcImageSmoothingInfo;

typedef struct lmrcImageCVEInfo {
	long sx; /* CVE domain size. */
	long sy; /* Apr.30,1996 */
	long sz;
} lmrcImageCVEInfo;

typedef struct lmrcImageTfunctionInfo {
	long sx; /* Tfunction domain size. */
	long sy; /* June 11,1996 */
	long sz;
} lmrcImageTfunctionInfo;

typedef struct lmrcImageHighlightInfo {
	long mode;
	float Bias; /* May 1,1996 */
	float Grad;
} lmrcImageHighlightInfo;

typedef struct lmrcImageLowPassFilterInfo 
{
	long mode; /* June 4,1996 */
	float hvp, width;
} lmrcImageLowPassFilterInfo;

typedef struct lmrcImageHighPassFilterInfo 
{
	long mode; /* June 5,1996 */
	float hvp, width;
	float pathWindowLow;
	float pathWindowHigh;
} lmrcImageHighPassFilterInfo;

typedef struct lmrcImageBandPassFilterInfo 
{
	long mode; /* June 5,1996 */
	float hvl, hvh, wl, wh;
	int flagLowWeight;
	double lowWeight;
} lmrcImageBandPassFilterInfo;

mrcImageDataSet

typedef enum mrcImageDataSetMode {
	mrcImageDataSetModeCentre = 0,
	mrcImageDataSetModeOrigin = 1
} mrcImageDataSetMode;

lmrcImageMultiCTFCompensation

typedef enum lmrcImageMultiCTFCompensationSolventFlatteningMode {
	lmrcImageMultiCTFCompensationSolventFlatteningModeDensityPeakIsSolvent=0,
	lmrcImageMultiCTFCompensationSolventFlatteningModeDefinedSTDIsSolvent=1
} lmrcImageMultiCTFCompensationSolventFlatteningMode;

typedef struct lmrcImageMultiCTFCompensationInfo {
	long   maxiteration;
	double okrms;
	long   diversefactor;
	double z;
	long   nhist;
	FILE*  logfile;
	lmrcImageMultiCTFCompensationSolventFlatteningMode solventMode;
	float  definedSTD;	 	
} lmrcImageMultiCTFCompensationInfo;

lmrcImageCTFSN

typedef struct lmrcImageCTFSNInfo
{
	long mode, deg1, deg2;
	ctfInfo ctf;
} lmrcImageCTFSNInfo;

lmrcImageFourierPowerSpectrum

typedef struct mrcImageFourierPowerSpectrum
{
	long n;
	double d, *h;
} mrcImageFourierPowerSpectrum;

typedef struct lmrcImageFourierPowerSpectrumInfo
{
	double dX, dY, dZ;
} lmrcImageFourierPowerSpectrumInfo;

API

初期化

extern mrcStatusType mrcInit(mrcImage* mrc, char* filaname);
extern mrcStatusType mrcDefaultHeaderValueSet(mrcImage* mrc);
extern mrcStatusType mrcHiddenDataSet(mrcImage* mrc, long mode);
extern void mrcImageFree(mrcImage* mrc, char* message);
extern void mrcTailerInit(mrcImage* mrc, long mode);
extern void mrcTailerCopy(mrcImage* dst, mrcImage* src, long mode);

ファイルの読み込み

extern mrcStatusType mrcFileRead  (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcImageRead (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcHeaderRead(mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcTailerRead(mrcImage* mrc, char* filename, char* message, long mode);

extern mrcStatusType mrcFileReadGeneral  (mrcImage* mrc, char* filename, char* type, char* message, long mode);
extern mrcStatusType mrcImageReadGeneral  (mrcImage* mrc, char* filename, char* type, char* message, long mode);
extern mrcStatusType mrcHeaderReadGeneral(mrcImage* mrc, char* filename, char* type, char* message, long mode);
extern mrcStatusType mrcTailerReadGeneral(mrcImage* mrc, char* filename, char* type, char* message, long mode);
extern mrcStatusType mrcFileGeneralListPrint(FILE* fpt); 

extern mrcStatusType mrcFileReadFEIextendedMRC  (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcImageReadFEIextendedMRC (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcHeaderReadFEIextendedMRC(mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcTailerReadFEIextendedMRC(mrcImage* mrc, char* filename, char* message, long mode);

extern mrcStatusType mrcFileReadIMODextendedMRC  (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcImageReadIMODextendedMRC (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcHeaderReadIMODextendedMRC(mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcTailerReadIMODextendedMRC(mrcImage* mrc, char* filename, char* message, long mode);

ファイルの書き出し

extern mrcStatusType mrcFileWrite  (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcImageWrite (mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcHeaderWrite(mrcImage* mrc, char* filename, char* message, long mode);
extern mrcStatusType mrcTailerWrite(mrcImage* mrc, char* filename, char* message, long mode);

#define mrcFileWriteModeGet(x)     BYTE4GETBYTE(x,0)
#define mrcImageWriteModeGet(x)    BYTE4GETBYTE(x,1)
#define mrcHeaderWriteModeGet(x)   BYTE4GETBYTE(x,2)
#define mrcTailerWriteModeGet(x)   BYTE4GETBYTE(x,3)
#define mrcFileWriteMode_InfoPrint         1
#define mrcFileWriteMode_NoCallForStatData 2

extern mrcStatusType mrcFileWriteLowerResolution(mrcImage* mrc, char* filename, char* message, long sample , long mode);

画素のデータの取得

ピクセル単位での画素データの取得

extern double mrcPixelDataGet(mrcImage* mrc,
                              mrcImageParaTypeReal x /* Pixel Unit */,
                              mrcImageParaTypeReal y /* Pixel Unit */,
                              mrcImageParaTypeReal z /* Pixel Unit */,
                              double* data,
                              mrcPixelDataType mode,
                              mrcPixelDataHowToGet how);

オングストローム単位での画素データの取得

extern double mrcImageDataGetbyAU(mrcImage* mrc,
                              mrcImageParaTypeReal x /* Angstrom */,
                              mrcImageParaTypeReal y /* Angstrom */,
                              mrcImageParaTypeReal z /* Angstrom */,
                              double* data,
                              mrcPixelDataType mode,
                              mrcPixelDataHowToGet how);

インライン型関数の画素データの取得

extern inline double mrcPixelDataGetFloatImage(mrcImage* img,
                mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z)

extern inline double mrcPixelDataGetFloatFTRe(mrcImage* fft,
                mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z)

extern inline double mrcPixelDataGetFloatFTIm(mrcImage* fft,
                mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z)

画素のデータの設定

画像情報の設定

extern void mrcInfoSet(mrcImage* mrc, FILE* fptIn, FILE* fptOut, mrcImageParaTypeInteger mode);

ピクセル単位の画素データの設定

extern void mrcImageDataSet(mrcImage* out, 
							mrcImage* in, 
							mrcImageParaTypeReal x,
							mrcImageParaTypeReal y,
							mrcImageParaTypeReal z,
							float phi,
							mrcImageDataSetMode  mode);

オングストローム単位での画素データの設定

extern double mrcImageDataSetbyAU(mrcImage* mrc,
			      mrcImageParaTypeReal x /* Angstrom */,
			      mrcImageParaTypeReal y /* Angstrom */,
			      mrcImageParaTypeReal z /* Angstrom */,
			      double data,
			      mrcPixelDataType mode);

インライン型関数の画素データの設定

extern double mrcPixelDataSet(mrcImage* mrc,
			      mrcImageParaTypeReal x /* Pixel Unit */,
			      mrcImageParaTypeReal y /* Pixel Unit */,
			      mrcImageParaTypeReal z /* Pixel Unit */,
			      double data,
			      mrcPixelDataType mode);

static inline void mrcPixelDataSetFloatImage(mrcImage* img, 
		mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z, double data)
{
	img->ImageFloatImage[x + y*img->HeaderN.x + z*img->HeaderN.x*img->HeaderN.y] = (float)data;
}

static inline void mrcPixelDataSetFloatFTRe(mrcImage* fft, 
		mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z, double data)
{
	fft->ImageFloatImage[2*(x + y*(fft->HeaderN.x/2+1) + z*(fft->HeaderN.x/2+1)*fft->HeaderN.y)] = (float)data;
}

static inline void mrcPixelDataSetFloatFTIm(mrcImage* fft, 
		mrcImageParaTypeInteger x, mrcImageParaTypeInteger y, mrcImageParaTypeInteger z, double data)
{
	fft->ImageFloatImage[2*(x + y*(fft->HeaderN.x/2+1) + z*(fft->HeaderN.x/2+1)*fft->HeaderN.y)+1] = (float)data;
}

extern void mrcStatDataSet(mrcImage* mrc, mrcImageParaTypeInteger mode);

画像処理一般のライブラリ

画像の演算(mrcImageOperation)

単項演算
加算
void lmrcImageAddedByReal(mrcImage* img, double d);                       img := img+d
減算
void lmrcImageMeanSubtraction(mrcImage* out, mrcImage* in)                      out  :=  in - mean
void lmrcImageMeanSubtraction(mrcImage* out, mrcImage* in)                      out  :=  in - mean
void lmrcImageSubtraction(mrcImage* out, mrcImage* in, double value)            out  :=  in - value
除算
void lmrcImageDevidedByReal(mrcImage* img, double d);                     img := img/d
void lmrcImageDevidedByRealForOnlyPositive(mrcImage* img, double d);      img := img/d, if img>=0, else img:=img;
void lmrcImageDevidedByImage(mrcImage* img, mrcImage* i1, mrcImage* i2);        img := i1/i2, 0 := 0/0, 0 := x/0
絶対値
void ImageAbs(mrcImage* out ,mrcImage* in);                               out := fabs(in);
それ以外
void lmrcImageSquare(mrcImage* in);                                       in := in*in
void lmrcImageRoot(mrcImage* in ,double eps);                             in := sqrt(in), if in>eps else in:=0
２項演算
連続加算
void lmrcImageAdd(mrcImage* img2, mrcImage* img1, long* number);                img2 := img2 + img1, number++
２乗加算
void lmrcSQRImageAdd(mrcImage* img2, mrcImage* img1, long* number);             img2 := img2 + img1*img1, number++
減算
void lmrcImageSubtractionCalc(mrcImage* out, mrcImage* in1, mrcImage* in2)      out  :=  in1 - in2
void llmrcImageSub(mrcImage*out ,mrcImage* in1 ,mrcImage* in2)                  out  : = in1 - in2（上記と同じ機能）
畳み込み
extern void lmrcImageConvolution(mrcImage* out, mrcImage* in,  mrcImage* kernel, int mode);
統計
void lmrcImagetMapForZero(mrcImage* t, mrcImage* avg, mrcImage* se);           t  := avg/se,  at present, avg, se must be given.
void lmrcImageSN(mrcImage* sn, mrcImage* avg, mrcImage* sig);                  sn := avg/sig, at present, avg, sig must be given.
void mrcImageStdDev(mrcImage* sig, mrcImage* avg, mrcImage* avg2, long number); sig:= sqrt(avg2 - avg*avg), at present, avg, avg2 must be given.
void mrcImageStdErr(mrcImage* se, mrcImage* avg, mrcImage* avg2, long number);  se := sqrt(avg2 - avg*avg)/number, at present, avg, avg2 must be given.

エンディアン関連

extern int mrcImageByteSwap(mrcImage* mrc, long mode);

投影

extern void lmrcImageXSection(mrcImage* proj, mrcImage* img, double Y);
extern void lmrcImageYSection(mrcImage* proj, mrcImage* img, double X);
extern void lmrcImageXProjection(mrcImage* proj, mrcImage* img);
extern void lmrcImageYProjection(mrcImage* proj, mrcImage* img);
extern void lmrcImageZProjection(mrcImage* proj, mrcImage* img);
extern void lmrcImageXYProjection(mrcImage* proj, mrcImage* img);
extern void lmrcImageYZProjection(mrcImage* proj, mrcImage* img);
extern void lmrcImageZXProjection(mrcImage* proj, mrcImage* img);

ヒストグラム

extern void lmrcImageHistgram(double** hist, unsigned long nlevel, mrcImage* img);
extern void lmrcImageHistgram2(double** hist, double delta, mrcImage* img);
extern void lmrcImageHistgram5(double** hist, unsigned long nlevel, double Low, double High, mrcImage* img);
extern void lmrcImageHistgram3(double** hist, unsigned long nlevel, mrcImage* img);
extern void lmrcImageHistgram4(double** hist, double delta, mrcImage* img);
extern void lmrcImageHistgram6(double** hist, unsigned long nlevel, double Low, double High, mrcImage* img);
extern void lmrcImageInformation(mrcImageInformation* info, mrcImage* img);

データコピー(mrcImageCopy)

extern void lmrcImageCopy(mrcImage* dst, mrcImage* src, mrcImageParaTypeRealCoord to);

画像モードのチェック

extern int IsFloatImage(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
extern int IsFloatFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
extern int IsImage(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
extern int IsFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);
extern int IsFFT(mrcImage* mrc, char* message, mrcImageParaTypeInteger mode);

画像情報の設定

extern void mrcImageInfoSet(mrcImage* mrc, FILE* fptIn, FILE* fptOut, long mode);

mrcImageToIntImage

extern void lmrcImageToIntImage(mrcImage* dst, mrcImage* src, mrcImageParaTypeInteger mode);

FFT関連

extern void lfft2d(mrcImage* fft, mrcImage* img);

extern void lmrcImageFFT(mrcImage* fft, mrcImage* img, long mode);
extern void lmrcImageFFTFirstDimensionOnly(mrcImage* fft, mrcImage* img, long mode);
#ifdef FFTW
extern void lmrcImageFFTWFlagSet(unsigned int flag);
#endif
extern void lmrcFFTFGconj(mrcImage* out, mrcImage* in1, mrcImage* in2);
extern void lmrcFFTFxG(mrcImage* out, mrcImage* in1, mrcImage* in2);
extern void lmrcImageCorrelation(mrcImage* out, mrcImage* in, mrcImage* ref, long mode);
extern void lmrcImageCorrelationModePrint(FILE* fpt);

extern void lmrcImageCorrelationWithCTFCompensation(mrcImage* out, mrcImage* in, ctfInfo* inctf, mrcImage* ref, ctfInfo* refctf, long mode);

mrcError

extern mrcStatusType mrcError(char* message, char* inRtnName, char* callRtnName, mrcStatusType status);
extern mrcStatusType mrcErrorMsg(FILE* fpt, char* message, char* inRtnName, char* callRtnName, mrcStatusType status);

lmrcFFTInfo

extern floatVector* lmrcFSInfoXAxisMag(mrcImage* fft);
extern floatVector* lmrcFSInfoXAxisPhase(mrcImage* fft);
extern floatVector* lmrcFSInfoYAxisMag(mrcImage* fft);
extern floatVector* lmrcFSInfoYAxisPhase(mrcImage* fft);

extern floatVector* lmrcFSInfoScatteringAngularDistribution(mrcImage* fft);
extern floatVector* lmrcFSInfoScatteringAngularDistributionAverage(mrcImage* fft);
extern floatVector* lmrcFSInfoScatteringAngularDistributionSD(mrcImage* fft);
extern floatVector* lmrcFSInfoSpacing(mrcImage* fft);

mrcImageCheckSameSize

extern void lmrcImageCheckSameSize(mrcImage* in, mrcImage* ref);

mrcImageCheckFFT

extern void lmrcImageCheckFFT(mrcImage* in, mrcImage* ref);

lmrcImageSmoothing

extern void lmrcImageSmoothingModeInfo(FILE* fpt);
extern void lmrcImageSmoothing(mrcImage* dst, mrcImage* src, lmrcImageSmoothingInfo* info, long mode);

lmrcImageCVE

extern void lmrcImageCVE(mrcImage* dst, mrcImage* src, lmrcImageCVEInfo* info);

lmrcImageTfunction

extern void lmrcImageTfunction(mrcImage* dst, mrcImage* src, lmrcImageTfunctionInfo* info, long mode);

lmrcImageHighlighting

extern void lmrcImageHighlightingInfoPrint(FILE* fpt);
extern void lmrcImageHighlighting(mrcImage* dst, mrcImage* src, lmrcImageHighlightInfo* info);

lmrcImageLowPassFilter

extern void lmrcImageLowPassFilter(mrcImage* dst, mrcImage* src, lmrcImageLowPassFilterInfo* info, long mode);

lmrcImageHighPassFilter

extern void lmrcImageHighPassFilter(mrcImage* dst, mrcImage* src, lmrcImageHighPassFilterInfo* info, long mode);

lmrcImageBandPassFilter

extern void lmrcImageBandPassFilter(mrcImage* dst, mrcImage* src, lmrcImageBandPassFilterInfo* info, long mode);

lmrcImageShrink

extern void lmrcImageShrink(mrcImage* dst, mrcImage* src, mrcImageParaTypeIntegerCoord S, long mode);

lmrcImageShift

extern void lmrcImageShift(mrcImage* out, mrcImage* in, mrcImageParaTypeRealCoord shift, mrcPixelDataHowToGet mode);
extern void lmrcImageShiftFollowingGC(mrcImage* out, mrcImage* in, int mode);

mrcImagePrint

extern  void mrcInfoPrint(FILE* fpt, mrcImage* mrc, mrcImageParaTypeInteger mode);

lmrcImageMultiCTFCompensation

extern void lmrcImageMultiCTFCompensationInfoInit(lmrcImageMultiCTFCompensationInfo* info);
extern void lmrcImageMultiCTFCompensationInfoSet(lmrcImageMultiCTFCompensationInfo* info);
extern void lmrcImageMultiCTFCompensation(mrcImage* dst, mrcImage* src, ctfInfo* ctf, long nfile, lmrcImageMultiCTFCompensationInfo info, long mode);

lmrcImageCTFObservation

extern void lmrcImageCTFObservation(mrcImage* dst, mrcImage* src, ctfInfo* ctf, long mode);
extern void lmrcImagesCTFObservation(mrcImage* dst, mrcImage* src, ctfInfo* ctf, long mode);

lmrcImageCTFCompensation

extern void lmrcImageCTFCompensation(mrcImage* src, ctfInfo* ctf, long mode);

lmrcImageCTFSN

extern void lmrcImageCTFSN(mrcImage *outMrc, const mrcImage *inMrc, lmrcImageCTFSNInfo *info, long mode);

lmrcImageFourierPowerSpectrum

extern mrcImageFourierPowerSpectrum lmrcImageFourierPowerSpectrumMakeSpectrum(const mrcImage *inFFT, lmrcImageFourierPowerSpectrumInfo *info);
extern void lmrcImageFourierPowerSpectrumDeleteSpectrum(mrcImageFourierPowerSpectrum theSpectrum);
extern mrcImageFourierPowerSpectrum lmrcImageFourierPowerSpectrum(const mrcImage *inMrc, lmrcImageFourierPowerSpectrumInfo *info, long mode);

extern void lmrcImageRotation3DModePrint(FILE* fpt);
extern void lmrcImageRotation3DFollowingEulerAngle(mrcImage* dst, mrcImage* src, const char* m, 
	mrcImageParaTypeReal rot1, mrcImageParaTypeReal rot2, mrcImageParaTypeReal rot3, mrcPixelDataHowToGet mode, int mode2);

extern void lmrcImageRotation3DFollowingMatrix3D(mrcImage* dst, mrcImage* src, Matrix3D mat, mrcPixelDataHowToGet mode, int mode2);

extern void lmrcImageRotation3DZXY(mrcImage* dst, mrcImage* src,  
	mrcImageParaTypeReal rotx, mrcImageParaTypeReal roty, mrcImageParaTypeReal rotz, mrcPixelDataHowToGet mode, int mode2);

extern void lmrcImageRotation2D(mrcImage* dst, mrcImage* src, double angle, mrcPixelDataHowToGet mode);
extern void lmrcImageRotation2DPeriodicBoundary(mrcImage* dst, mrcImage* src, double angle, mrcPixelDataHowToGet mode);

mrcImageSectionGet

extern char* mrcImageSectionGetModeDescription(long mode);
extern void mrcImageSectionGet(mrcImage* dst, mrcImage* src, mrcImageParaTypeReal z, long mode);

mrcImageSectionSet

extern void mrcImageSectionSet(mrcImage* dst, mrcImage* src, mrcImageParaTypeReal z, long mode);
extern double lmrcImageMaxDataGet(mrcImage* src, long mode);

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