cryoSPARCトラブルシューティング

依存ライブラリ関係

OSError: cublas library not found

signle workstationインストール(Docker)ではこのようなエラーは出なかったが、swarmでクラスタを構築してmasterをworkerに分けて使った場合に生じたエラー。cryoSPARCのインストール方法が異なるだけで、Dockerイメージとしては同じものを使っているので、理解に苦しむ挙動。

[CPU: 190.1 MB]  Traceback (most recent call last):
  File "cryosparc2_worker/cryosparc2_compute/run.py", line 72, in cryosparc2_compute.run.main
  File "cryosparc2_compute/jobs/jobregister.py", line 337, in get_run_function
    runmod = importlib.import_module(".."+modname, __name__)
  File "/net/fs10/work02/csparc/cryosparc2_worker/deps/anaconda/lib/python2.7/importlib/__init__.py", line 37, in import_module
    __import__(name)
  File "cryosparc2_worker/cryosparc2_compute/jobs/abinit/run.py", line 15, in init cryosparc2_compute.jobs.abinit.run
  File "cryosparc2_compute/engine/__init__.py", line 8, in <module>
    from engine import *
  File "cryosparc2_worker/cryosparc2_compute/engine/engine.py", line 12, in init cryosparc2_compute.engine.engine
  File "cryosparc2_worker/cryosparc2_compute/engine/gfourier.py", line 6, in init cryosparc2_compute.engine.gfourier
  File "/net/fs10/work02/csparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/fft.py", line 20, in <module>
    from . import misc
  File "/net/fs10/work02/csparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/misc.py", line 25, in <module>
    from . import cublas
  File "/net/fs10/work02/csparc/cryosparc2_worker/deps/anaconda/lib/python2.7/site-packages/skcuda/cublas.py", line 56, in <module>
    raise OSError('cublas library not found')
OSError: cublas library not found