「コマンド一覧」の版間の差分
提供: Eospedia
(→コマンド一覧) |
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| (同じ利用者による、間の8版が非表示) | |||
| 行55: | 行55: | ||
*[[dm2mrc]] | *[[dm2mrc]] | ||
*[[dmInfo]] | *[[dmInfo]] | ||
| + | *[[dm2mrc]] | ||
*[[dos2unix]] | *[[dos2unix]] | ||
*[[electronWaveLength]] | *[[electronWaveLength]] | ||
| 行135: | 行136: | ||
*[[molvieProjection]] | *[[molvieProjection]] | ||
*[[molvieViewer]] | *[[molvieViewer]] | ||
| + | *[[mrc2ascii]] | ||
| + | *[[mrc2bild]] | ||
*[[mrc2dsn6]] | *[[mrc2dsn6]] | ||
*[[mrc2Dto3D]] | *[[mrc2Dto3D]] | ||
| 行144: | 行147: | ||
*[[mrc2map]] | *[[mrc2map]] | ||
*[[mrc2mrc]] | *[[mrc2mrc]] | ||
| + | *[[mrc2png]] | ||
*[[mrc2pov]] | *[[mrc2pov]] | ||
*[[mrc2tiff]] | *[[mrc2tiff]] | ||
| 行168: | 行172: | ||
*[[mrcFFTXFiltering]] | *[[mrcFFTXFiltering]] | ||
*[[mrcFTMeridianEquatorRedece]] | *[[mrcFTMeridianEquatorRedece]] | ||
| + | *[[mrcImageHoleFilling]] | ||
*[[mrcImage1dAverageByCorrelation]] | *[[mrcImage1dAverageByCorrelation]] | ||
*[[mrcImage1dCutAverage]] | *[[mrcImage1dCutAverage]] | ||
| 行175: | 行180: | ||
*[[mrcImage2DBackProjection]] | *[[mrcImage2DBackProjection]] | ||
*[[mrcImage2DProjection]] | *[[mrcImage2DProjection]] | ||
| + | *[[mrcImage2FFT]] | ||
*[[mrcImage2pdb]] | *[[mrcImage2pdb]] | ||
*[[mrcImage3DHighResoEmphasis]] | *[[mrcImage3DHighResoEmphasis]] | ||
| 行251: | 行257: | ||
*[[mrcImageEstimateTiltImage]] | *[[mrcImageEstimateTiltImage]] | ||
*[[mrcImageExpression]] | *[[mrcImageExpression]] | ||
| + | *[[mrcImageFeatureCalc]] | ||
*[[mrcImageFeatureExtraction]] | *[[mrcImageFeatureExtraction]] | ||
*[[mrcImageFFT]] | *[[mrcImageFFT]] | ||
| 行265: | 行272: | ||
*[[mrcImageFourierShellCorrelation]] | *[[mrcImageFourierShellCorrelation]] | ||
*[[mrcImageFractalFourierShellCorrelation]] | *[[mrcImageFractalFourierShellCorrelation]] | ||
| − | |||
*[[mrcImageFTest]] | *[[mrcImageFTest]] | ||
*[[mrcImageGaussDisc]] | *[[mrcImageGaussDisc]] | ||
| 行327: | 行333: | ||
*[[mrcImagePanoramaCreate]] | *[[mrcImagePanoramaCreate]] | ||
*[[mrcImageParticleCandidateExtract]] | *[[mrcImageParticleCandidateExtract]] | ||
| + | *[[mrcImagePattersionFunctionCalc]] | ||
*[[mrcImagePCA]] | *[[mrcImagePCA]] | ||
*[[mrcImagepdbFileReduce]] | *[[mrcImagepdbFileReduce]] | ||
2018年6月1日 (金) 05:45時点における最新版
Eosに実装されているコマンドの一覧(アルファベット順)。機能別のコマンドを調べたいときにはこちらをご覧下さい。
- こちらのシェルスクリプトを使用すると、ターミナルなどからの入力で各コマンドのページに移動することができます。
- templateCommandWiki コマンドのヘルプを書くためのテンプレート
- このコマンド一覧はこちらのシェルスクリプトを利用して作成しています。
コマンド一覧
- anglediffcalc
- anglediffchk
- angleMatchTest_k
- array2mrc
- arrayPCA
- bin2mrc
- bmp2mrc
- bmpFileInfo
- calcCommonLine
- CheckCommonLineData
- CheckOfOrientation
- CheckOrientationByDegree
- clusterLog2ToLog
- clusterLogASCII2Binary
- clusterShow
- CommonLineCalculation
- CommonLineRankCalc_k
- commonLinesSearchByVoting
- coordRotation
- ctfDeterminationFromMultiImage
- ctfDeterminationFromPhaseComparison
- ctfDeterminationFromThonRing
- ctfDetermine
- ctfDisplay
- ctfEnvelopFunction
- ctfEnvelopFunctionEstimate
- ctfFunction
- ctfFunctionServer
- ctfInfoSet
- ctfMultiFunction
- ctfWeightMapCreation
- ctfZeroPoint
- cufft
- dataAnalysis_kayabuki
- dcdAtomChangeDistanceFromAtom
- dcdAtomDistanceDistribution
- dcdCompareCA
- dcdDistanceAtomBetweenAtom
- dcdFilePrint
- dcdInfo
- dcdSelectAtoms
- dcdSerectAtom
- dcdTest
- dcdTimeSeriesBehavior
- defocusDeterminationFromThonRing
- Descartes2Polar
- Display2
- Display3
- dm2mrc
- dmInfo
- dm2mrc
- dos2unix
- electronWaveLength
- emData2mrc
- energyTransferModelCheck
- energyTransferModelResultCheck
- Eos
- eosPointProjector
- eosPointRotation
- EvaluateCorrelationMapwithCommonLine
- FETmapOrientationSearchBySimultaneousFitting
- FETOrientationSearchByAnnealing
- FETOrientationSearchByFeatureAlignment
- FETsmallMapSetCreate_forSimultaneousMinimization
- fft2d
- gmolvie
- hf2000Init
- hf2000LenzCurrent
- hf2000SpecimenPosition
- hidaka2009
- homology2PG
- hostCondition
- imagesClustering
- imagesView
- imageView
- imodst2mrc
- ip2mrc
- khorosFilterGenerate
- largeIPInfo
- LCalculationForOrientationSearch
- ll2ltlg
- llDataAverage
- llDataAxisSearch
- llDataCompare
- llDataContributionCalcDifferentN
- llDataCTFCompensate
- llDataDump
- llDataEquatorAdd
- llDataExtract
- llDataFit
- llDataFitServer
- llDataInfo
- llDataLowPassFiltering
- llDataMultiCTFCompensation
- llDataNEstimation
- llDataNormalization
- llDataPrint
- llDataRescaling
- llDataResolutionCheck
- llDatarMaxLimit
- llDataRotation
- llDataSelectionEstimation
- llDataSeparate
- llDataWeightSet
- llExtract
- llExtractCtfinfFileCreate
- llExtractCtrlFileCreate
- llExtractWithLayerSeparation
- llExtractWithLayerSeparationCtrlFileCreate
- llExtractWithLayerSeparationCtrlFileCreateMyosin
- llExtractWithLayerSeparationFilamentInfo
- llExtractWithLayerSeparationServer
- llExtractWithLayerSeparationSingle
- ltlg2mrc
- ltlg2ps
- ltlgDataInfo
- mallocCheck
- marker2Dto3DEstimator
- matrix3DEulerAngleTransform
- matrix3DFromEulerAngle
- matrix3DInverse
- matrix3DToEulerAngle
- moi2mrc
- molecularEnvelopeResampling
- molecularWeightCalc
- molvie
- molvieDock
- molvieFlight
- molvieMrcViewer
- molvieProjection
- molvieViewer
- mrc2ascii
- mrc2bild
- mrc2dsn6
- mrc2Dto3D
- mrc2Dto3DforVariation
- mrc2fld
- mrc2gif
- mrc2hdf
- mrc2lattice
- mrc2map
- mrc2mrc
- mrc2png
- mrc2pov
- mrc2tiff
- mrc2viff
- mrc3DExtractZ
- mrc3Dto2D
- mrcFETnormalizeBySD
- mrcFFTBandPassFilter
- mrcFFTCTFCompensation
- mrcFFTDigitize
- mrcFFTExpression
- mrcFFTFibreDiagram
- mrcFFTFiltering
- mrcFFTInfo
- mrcFFTIQEstimation
- mrcFFTLayerLineCheck
- mrcFFTMedianFilter
- mrcFFTplainreduce
- mrcFFTProjection
- mrcFFTResampling
- mrcFFTShellInfo
- mrcFFTSizeChange
- mrcFFTSpectrum
- mrcFFTXFiltering
- mrcFTMeridianEquatorRedece
- mrcImageHoleFilling
- mrcImage1dAverageByCorrelation
- mrcImage1dCutAverage
- mrcImage1DProjectionfrom2D
- mrcImage1dShiftAverageByAnnealing
- mrcImage1dShiftByCorrelation
- mrcImage2DBackProjection
- mrcImage2DProjection
- mrcImage2FFT
- mrcImage2pdb
- mrcImage3DHighResoEmphasis
- mrcImage3DPad
- mrcImage3DPad2
- mrcImage3DSymmetryFind
- mrcImage3DWindowing
- mrcImageAbnormalValueRemove
- mrcImageActinSingleParticleAnalysis
- mrcImageAdaptiveBinalization
- mrcImageAdd
- mrcImageAddValue
- mrcImageAreaCalc
- mrcImageAsProbability
- mrcImageAssignedToTFofPDB
- mrcImageAutoCorrelationWithWindowing
- mrcImageAutoFilamentExtract
- mrcImageAutoFilamentExtractResultAnalysis
- mrcImageAutoRotationAverage
- mrcImageAutoRotationCorrelation
- mrcImageAutoRotationCorrelation3D
- mrcImageAutoRotationCorrelationResultPrint
- mrcImageAutoTriming
- mrcImageAverage
- mrcImageBandPassFilter
- mrcImageBilateralFilter
- mrcImageBinalization
- mrcImageBlockMerge
- mrcImageBottomHatTransform
- mrcImageBoundaryInfo
- mrcImageBtest
- mrcImageCCDNoiseRemove
- mrcImageCenterDensityChange
- mrcImageCenterGet
- mrcImageCenterOfMassCalculate
- mrcImageCircumferentialProjection
- mrcImageClosing
- mrcImageClusterAnalysis
- mrcImageColoring
- mrcImageCommonLineSearch
- mrcImageConnection
- mrcImageConnectivityNumberCalc
- mrcImageContourSurfaceCreate
- mrcImageConvolution
- mrcImageCoordinateChange
- mrcImageCoreImageCalc
- mrcImageCorrelation
- mrcImageCorrelationInFourierSpace
- mrcImageCorrelationServer
- mrcImageCorrelationWithCTFCompensation
- mrcImageCrystalCreate
- mrcImageCTFCompensation
- mrcImageCTFCompensationForTiltImage
- mrcImageCTFDetermination
- mrcImageCTFObservation
- mrcImageCTFSN
- mrcImageCutAndSetInArray
- mrcImageCVE
- mrcImageCylinderSection
- mrcImageDeadPixelCorrection
- mrcImageDeconvolution
- mrcImageDensityChangeEstimation
- mrcImageDensityInfo
- mrcImageDensityNormalization
- mrcImageDensityNormalizationByImage
- mrcImageDilation
- mrcImageDisplayDensityAsTempFactor
- mrcImageDistanceConversion
- mrcImageDividedByFile
- mrcImageDivideInfoForTomography
- mrcImageDivideIntoTwoImages
- mrcImageEdgeEnhancement
- mrcImageEdgeImageGet
- mrcImageEnhancementWithFuzzySets
- mrcImageErosion
- mrcImageEstimateTiltImage
- mrcImageExpression
- mrcImageFeatureCalc
- mrcImageFeatureExtraction
- mrcImageFFT
- mrcImageFFTLayerLineExtraction
- mrcImageFFTSetsExtract
- mrcImageFilamentSearch
- mrcImageFilterCreate
- mrcImageFilteringbyFile
- mrcImageFilteringbyFileForVariance
- mrcImageFloating
- mrcImageFOMCalc
- mrcImageFourierNeighborCorrelation
- mrcImageFourierPowerSpectrum
- mrcImageFourierShellCorrelation
- mrcImageFractalFourierShellCorrelation
- mrcImageFTest
- mrcImageGaussDisc
- mrcImageGaussSphere
- mrcImageHeaderChange
- mrcImageHelicalAveraging
- mrcImageHelicalConvolution
- mrcImageHelicalMappingFrom2DImage
- mrcImageHelicalMasking
- mrcImageHelicalMaskingBy2DImage
- mrcImageHelicalProjection
- mrcImageHighlighting
- mrcImageHighPassFilter
- mrcImageHoughTransform
- mrcImageHoughTransformInverse
- mrcImageInfo
- mrcImageInverseRadonTransform
- mrcImageLabeling
- mrcImageLogicalOperation
- mrcImageLowPassFilter
- mrcImageMagnificationChange
- mrcImageMake2DArrayImage
- mrcImageMakeCylinder
- mrcImageMakeDump
- mrcImageMakeFromTextFile
- mrcImageMakeSphere
- mrcImageMappingtoPdb
- mrcImageMasking
- mrcImageMaskingByImage
- mrcImageMeanFreePathCalc
- mrcImageMergebyside
- mrcImageMirroring
- mrcImageModeChange
- mrcImageModelCreate
- mrcImageModelSubfilamentsCreate
- mrcImageMontageCreate
- mrcImageMove
- mrcImageMultiCTFCompensation
- mrcImageMultiCTFDetermination
- mrcImageMultiplying
- mrcImageMultiplyingbyFile
- mrcImageNeuralNetParticleExtraction
- mrcImageNeuralNetParticleLearning
- mrcImageNfoldAxisSearch
- mrcImageNLMeansFilter
- mrcImageNoiseAdd
- mrcImageNoiseCreate
- mrcImageNoiseReductionByRelaxation
- mrcImageNormalDistributionTest
- mrcImageNormalizedSubtraction
- mrcImageNormalizing
- mrcImageNullImageCreate
- mrcImageOddBoxel
- mrcImageOneLineSimilarityCalc
- mrcImageOpening
- mrcImageOrientationSearch
- mrcImageOrientationSearchByHigherSelection
- mrcImageOrientationSearchByHybridization
- mrcImageOrientationSearchBySimultaneousMinimization
- mrcImagePad
- mrcImagePanoramaCreate
- mrcImageParticleCandidateExtract
- mrcImagePattersionFunctionCalc
- mrcImagePCA
- mrcImagepdbFileReduce
- mrcImagePeakSearch
- mrcImagePhaseCTFCompensationFromCTFINFO
- mrcImagePixelDataGet
- mrcImagePolyROI
- mrcImagePosterization
- mrcImagePrint
- mrcImagePrint3D
- mrcImageProjection
- mrcImagePut3D
- mrcImageRadialDistribution
- mrcImageRadonTransform
- mrcImageRandomParticlesImageCreate
- mrcImageRealValueAdd
- mrcImageRectangleGet
- mrcImageRectangleGetByCorrelation
- mrcImageRefConv2D
- mrcImageRefCreate
- mrcImageRefFFTConv2D
- mrcImageRefScaleChangeWithPad
- mrcImageResolutionEstimateForFilaments
- mrcImageReverse
- mrcImageROI
- mrcImageROI3D
- mrcImageROIs
- mrcImageROItoPCAoutputImage
- mrcImageRotation
- mrcImageRotation3D
- mrcImageSamplingUnitChange
- mrcImageScalarAdd
- mrcImageSectionGet
- mrcImageSetFunction
- mrcImageShapeOrientation
- mrcImageShapePCA
- mrcImageShapePCAFit
- mrcImageShapeSearch
- mrcImageShift
- mrcImageShiftFollowingGC
- mrcImageShrink
- mrcImageSiemensStar
- mrcImageSimilarImageSearch
- mrcImageSimilarityEstimate
- mrcImageSinogramCorrelation
- mrcImageSinogramCreate
- mrcImageSinogramFFT
- mrcImageSmoothing
- mrcImageSN
- mrcImageSolventFlattening
- mrcImageSpatialFrequencyFilter
- mrcImageSphere
- mrcImageSphereCheck
- mrcImageSplit
- mrcImageSquare
- mrcImagesSinogramCorrelation
- mrcImageStack
- mrcImageStandardDeviation
- mrcImagestoRef
- mrcImageSubtraction
- mrcImageSuperResolution
- mrcImageSymmetryAverage
- mrcImageSymmetryCentreFind
- mrcImageSymmetryFind
- mrcImageTfunction
- mrcImageTiltAxisSearch
- mrcImageTiltAxisSearchHelp
- mrcImageToNAMDConstantForces
- mrcImageToneReversal
- mrcImageTopHatTransform
- mrcImageToPointsSet
- mrcImageTrans
- mrcImageTransformDescartesIntoPolar
- mrcImageTransformSign
- mrcImageTranspose
- mrcImageTTest
- mrcImageTwoImageTest
- mrcImageUnbentROI
- mrcImageUnexpectedMassFromPDB
- mrcImageUntwist
- mrcImageVarianceAnalysis
- mrcImageVarianceMap
- mrcImageVolumeCalc
- mrcImageWindowing
- mrcImageZPad
- mrcImateToPointsSet
- mrcInfo
- mrcInfoSet
- mrcManipulate_kaya
- mrcMask
- mrcMeanYlinePos
- mrcMirrorImageCreate
- mrcRadon2Dto3D
- mrcRefCoreGet
- mrcRefCorEstimate
- mrcRefCorModify
- mrcRefCorrelation
- mrcRefCorrelationConv
- mrcRefEstimate
- mrcRefFFTConvert
- mrcRefHeaderCreate
- mrcRefHighPassFilter
- mrcRefImageCorrelation
- mrcRefImageOmegaCorrelation
- mrcRefImagepwzCorEstimate
- mrcRefImagepwzCorModify
- mrcRefImagepwzCorPeakFind
- mrcRefImagepwzCorrelation
- mrcRefImagepwzCorrelationByFFT
- mrcRefImagepwzCorSmoothing
- mrcRefImagexaFit
- mrcRefLowPassFilter
- mrcRefNoiseAdd
- mrcRefNormalizing
- mrcRefPhaseImageCreate
- mrcRefSmoothing
- mrcRefz1ImageCorrelation
- mrcSinogramFET
- mrcSinogramFETcalcSDforNormalize
- mrcSinogramFETcalcWeight
- mrcSinogramFETcorrelationMap
- mrcSinogramFETnormalizedMap
- mrcSinogramFETreferredCorrelation
- mrcSinogramFETsmoothParameterMatching
- mrcView
- muscleSimulation
- obj3Don2DImageView
- pdb2bender
- pdb2mrc
- pdb2mrc2d
- pdb2mrc2dWithCTF
- pdb2SketchMacro
- pdb2ucd
- pdbAtomSection
- pdbCAOnly
- pdbChargeFit
- pdbCoordAdd
- pdbCrystalCreate
- pdbDisplay
- pdbFileMerge
- pdbHelix
- pdbHomologySearch
- pdbInfo
- pdbListRMSDCalc
- pdbListVectorCalc
- pdbMatrixCreate
- pdbMolecularInterfaceFind
- pdbMove
- pdbNAMDRestraintCreate
- pdbNearAtomListShow
- pdbOneProteinGet
- pdbPCA
- pdbProteinIDSet
- pdbRhoFit
- pdbRhoFitCoiledCoil
- pdbRhoFitTm
- pdbRotation
- pdbSecondaryStructurePrint
- pdbShapeFit
- pdbSurface
- pdbTempFactorSet
- pdbTrans
- pdbTwoProteinFit
- pdbView
- pdbWaterAdd
- pgDataBaseSelectServer
- pgJournalSelect
- pgJournalSelectCORBAClient
- pgJournalSelectCORBAServer
- pgMemoSelectCORBAServer
- pgSelect
- pointAffineTransform
- pointsSetToPDB
- Polar2Descartes
- probabilityDensityFunction
- ProjectionDirectionMapCreate
- psFileMerge
- psFilePageMerge
- randomNormalGet
- randomUniformGet
- smolet
- StereoDisplay
- TestForLcalculationOfOrientationSearchBySimultaneousMinimization
- tgaInfo
- tiff2mrc
- tiltInfoDetermine
- vector2pdb
- vectorImageNearestNeighborMethod
- Visualmake
- WeightCalculationOfCommonLineSearch
- WeightCalculationOfCommonLineSearchByAllSinogram
- WeigthCaluculationOfCommonLineCalculation
