RELIONの定義済みラベル
- RELION v3.0.5の以下コマンドの出力です。
$ relion_refine --print_metadata_labels
- 読みにくいのでそのうち表にします。
- フォーマットは "ラベル名 (C++型名) : 説明"です。
+++ RELION MetaDataLabel (EMDL) definitions: +++
rlnAccumMotionEarly (double) : Accumulated global motion during the first frames of the movie (in A)
rlnAccumMotionLate (double) : Accumulated global motion during the last frames of the movie (in A)
rlnAccumMotionTotal (double) : Accumulated global motion during the entire movie (in A)
rlnAccuracyRotations (double) : Estimated accuracy (in degrees) with which rotations can be assigned
rlnAccuracyTranslations (double) : Estimated accuracy (in pixels) with which translations can be assigned
rlnAdaptiveOversampleFraction (double) : Fraction of the weights that will be oversampled in a second pass of the adaptive oversampling strategy
rlnAdaptiveOversampleOrder (int) : Order of the adaptive oversampling (0=no oversampling, 1= 2x oversampling; 2= 4x oversampling, etc)
rlnAmplitudeContrast (double) : Amplitude contrast (as a fraction, i.e. 10% = 0.1)
rlnAmplitudeCorrelationMaskedMaps (double) : Correlation coefficient between amplitudes in Fourier shells of masked maps
rlnAmplitudeCorrelationUnmaskedMaps (double) : Correlation coefficient between amplitudes in Fourier shells of unmasked maps
rlnAnglePsi (double) : Third Euler, or in-plane angle (psi, in degrees)
rlnAnglePsiFlipRatio (double) : Flip ratio of bimodal psi prior (0~0.5, 0 means an ordinary prior, 0.5 means a perfect bimodal prior)
rlnAnglePsiPrior (double) : Center of the prior (in degrees) on the third Euler angle (psi)
rlnAngleRot (double) : First Euler angle (rot, in degrees)
rlnAngleRotPrior (double) : Center of the prior (in degrees) on the first Euler angle (rot)
rlnAngleTilt (double) : Second Euler angle (tilt, in degrees)
rlnAngleTiltPrior (double) : Center of the prior (in degrees) on the second Euler angle (tilt)
rlnAngstromResolution (double) : Resolution (in Angstroms)
rlnAreaId (int) : ID (i.e. a unique number) of an area (i.e. field-of-view)
rlnAreaName (string) : Name of an area (i.e. field-of-view)
rlnAutoLocalSearchesHealpixOrder (int) : Healpix order (before oversampling) from which autosampling procedure will use local angular searches
rlnAutopickFigureOfMerit (double) : Autopicking FOM for a particle
rlnAvailableMemory (double) : Available memory per computing node (i.e. per MPI-process)
rlnAverageNrOfFrames (int) : Number of movie frames that one averages over upon extraction of movie-particles
rlnAveragePmax (double) : Average value (over all images) of the maxima of the probability distributions
rlnAverageValue (double) : Average value for the pixels in an image
rlnBeamTiltClass (int) : Beam-tilt class of a particle
rlnBeamTiltX (double) : Beam tilt in the X-direction (in mrad)
rlnBeamTiltY (double) : Beam tilt in the Y-direction (in mrad)
rlnBestResolutionThusFar (double) : The highest resolution that has been obtained in this optimization thus far
rlnBfactorUsedForSharpening (double) : Applied B-factor in the sharpening of the map
rlnBodyKeepFixed (int) : Flag to indicate whether to keep a body fixed (value 1) or keep on refining it (0)
rlnBodyMaskName (string) : Name of an image that contains a [0,1] body mask for multi-body refinement
rlnBodyReferenceName (string) : Name of an image that contains the initial reference for one body of a multi-body refinement
rlnBodyRotateDirectionX (double) : X-component of axis around which to rotate this body
rlnBodyRotateDirectionY (double) : Y-component of axis around which to rotate this body
rlnBodyRotateDirectionZ (double) : Z-component of axis around which to rotate this body
rlnBodyRotateRelativeTo (int) : Number of the body relative to which this body rotates (if negative, use rlnBodyRotateDirectionXYZ)
rlnBodySigmaAngles (double) : Width of prior on all three Euler angles of a body in multibody refinement (in degrees)
rlnBodySigmaOffset (double) : Width of prior on origin offsets of a body in multibody refinement (in pixels)
rlnBodySigmaPsi (double) : Width of prior on psi angles of a body in multibody refinement (in degrees)
rlnBodySigmaRot (double) : Width of prior on rot angles of a body in multibody refinement (in degrees)
rlnBodySigmaTilt (double) : Width of prior on tilt angles of a body in multibody refinement (in degrees)
rlnBodyStarFile (string) : Name of STAR file with body masks and metadata
rlnChangesOptimalClasses (double) : The number of particles that changed their optimal clsas assignment in the last iteration
rlnChangesOptimalOffsets (double) : The average change in optimal translation in the last iteration (in pixels)
rlnChangesOptimalOrientations (double) : The average change in optimal orientation in the last iteration (in degrees)
rlnChromaticAberration (double) : Chromatic aberration (in millimeters)
rlnClassDistribution (double) : Probability Density Function of the different classes (i.e. fraction of images assigned to each class)
rlnClassNumber (int) : Class number for which a particle has its highest probability
rlnClassPriorOffsetX (double) : Prior in the X-offset for a class (in pixels)
rlnClassPriorOffsetY (double) : Prior in the Y-offset for a class (in pixels)
rlnCoarseImageSize (int) : Current size of the images to be used in the first pass of the adaptive oversampling strategy (may be smaller than the original image size)
rlnComment (string) : A metadata comment (This is treated in a special way)
rlnConvergenceCone (double) : Convergence cone (in mrad)
rlnCoordinateX (double) : X-Position of an image in a micrograph (in pixels)
rlnCoordinateY (double) : Y-Position of an image in a micrograph (in pixels)
rlnCoordinateZ (double) : Z-Position of an image in a 3D micrograph, i.e. tomogram (in pixels)
rlnCorrectedFourierShellCorrelationPhaseRandomizedMaskedMaps (double) : FSC value after masking of the randomized-phases maps
rlnCorrelationFitGuinierPlot (double) : The correlation coefficient of the fitted line through the Guinier-plot
rlnCtfAstigmatism (double) : Absolute value of the difference between defocus in U- and V-direction (in A)
rlnCtfBfactor (double) : B-factor (in A^2) that describes CTF power spectrum fall-off
rlnCtfDataAreCtfPremultiplied (bool) : Flag to indicate that the input images have been premultiplied with their CTF
rlnCtfDataArePhaseFlipped (bool) : Flag to indicate that the input images have been phase-flipped
rlnCtfFigureOfMerit (double) : Figure of merit for the fit of the CTF (not used inside relion_refine)
rlnCtfImage (string) : Name of an image with all CTF values
rlnCtfMaxResolution (double) : Estimated maximum resolution (in A) of significant CTF Thon rings
rlnCtfScalefactor (double) : Linear scale-factor on the CTF (values between 0 and 1)
rlnCtfValidationScore (double) : Gctf-based validation score for the quality of the CTF fit
rlnCtfValue (double) : Value of the Contrast Transfer Function
rlnCurrentImageSize (int) : Current size of the images used in the refinement
rlnCurrentIteration (int) : The number of the current iteration
rlnCurrentResolution (double) : Current resolution where SSNR^MAP drops below 1 (in 1/Angstroms)
rlnDataDimensionality (int) : Dimensionality of the data (2D/3D)
rlnDataType (int) : Type of data stored in an image (e.g. int, RFLOAT etc)
rlnDefocusAngle (double) : Angle between X and defocus U direction (in degrees)
rlnDefocusU (double) : Defocus in U-direction (in Angstroms, positive values for underfocus)
rlnDefocusV (double) : Defocus in V-direction (in Angstroms, positive values for underfocus)
rlnDetectorPixelSize (double) : Pixel size of the detector (in micrometers)
rlnDiff2RandomHalves (double) : Power of the differences between two independent reconstructions from random halves of the data
rlnDifferentialPhaseResidualMaskedMaps (double) : Differential Phase Residual in Fourier shells of masked maps
rlnDifferentialPhaseResidualUnmaskedMaps (double) : Differential Phase Residual in Fourier shells of unmasked maps
rlnDoAutoRefine (bool) : Flag to indicate that 3D auto-refine procedure is being used
rlnDoCorrectCtf (bool) : Flag to indicate that CTF-correction should be performed
rlnDoCorrectMagnification (bool) : Flag to indicate that (per-group) magnification correction should be performed
rlnDoCorrectNorm (bool) : Flag to indicate that (per-image) normalisation-error correction should be performed
rlnDoCorrectScale (bool) : Flag to indicate that internal (per-group) intensity-scale correction should be performed
rlnDoFastSubsetOptimisation (bool) : Use subsets of the data in the earlier iterations to speed up convergence
rlnDoHelicalRefine (bool) : Flag to indicate that helical refinement should be performed
rlnDoIgnoreCtfUntilFirstPeak (bool) : Flag to indicate that the CTFs should be ignored until their first peak
rlnDoMapEstimation (bool) : Flag to indicate that MAP estimation should be performed (otherwise ML estimation)
rlnDoOnlyFlipCtfPhases (bool) : Flag to indicate that CTF-correction should only comprise phase-flipping
rlnDoRealignMovies (bool) : Flag to indicate that individual frames of movies are being re-aligned
rlnDoSkipAlign (bool) : Flag to indicate that orientational (i.e. rotational and translational) searches will be omitted from the refinement, only marginalisation over classes will take place
rlnDoSkipRotate (bool) : Flag to indicate that rotational searches will be omitted from the refinement, only marginalisation over classes and translations will take place
rlnDoSolventFlattening (bool) : Flag to indicate that the references should be masked to set their solvent areas to a constant density
rlnDoSolventFscCorrection (bool) : Flag to indicate that the FSCs should be solvent-corrected during refinement
rlnDoSplitRandomHalves (bool) : Flag to indicate that the data should be split into two completely separate, random halves
rlnDoStochasticGradientDescent (bool) : Flag to indicate that SGD-optimisation should be performed (otherwise expectation maximisation)
rlnDoZeroMask (bool) : Flag to indicate that the surrounding solvent area in the experimental particles will be masked to zeros (by default random noise will be used
rlnEnabled (bool) : Not used in RELION, only included for backward compatibility with XMIPP selfiles
rlnEnergyLoss (double) : Energy loss (in eV)
rlnEstimatedResolution (double) : Estimated resolution (in A) for a reference
rlnExperimentalDataStarFile (string) : STAR file with metadata for the experimental images
rlnFinalResolution (double) : Final estimated resolution after postprocessing (in Angstroms)
rlnFittedInterceptGuinierPlot (double) : The fitted intercept of the Guinier-plot
rlnFittedSlopeGuinierPlot (double) : The fitted slope of the Guinier-plot
rlnFixSigmaNoiseEstimates (bool) : Flag to indicate that the estimates for the power spectra of the noise should be kept constant
rlnFixSigmaOffsetEstimates (bool) : Flag to indicate that the estimates for the stddev in the origin offsets should be kept constant
rlnFixTauEstimates (bool) : Flag to indicate that the estimates for the power spectra of the signal (i.e. the references) should be kept constant
rlnFourierCompleteness (double) : Fraction of Fourier components (per resolution shell) with SNR>1
rlnFourierShellCorrelation (double) : FSC value (of unspecified type, e.g. masked or unmasked)
rlnFourierShellCorrelationCorrected (double) : Final FSC value: i.e. after correction based on masking of randomized-phases maps
rlnFourierShellCorrelationMaskedMaps (double) : FSC value after masking of the original maps
rlnFourierShellCorrelationUnmaskedMaps (double) : FSC value before masking of the original maps
rlnFourierSpaceInterpolator (int) : The kernel used for Fourier-space interpolation (NN=0, linear=1)
rlnGoldStandardFsc (double) : Fourier shell correlation between two independent reconstructions from random halves of the data
rlnGroupName (string) : The name of a group of images (e.g. all images from a micrograph)
rlnGroupNrParticles (int) : Number particles in a group of images
rlnGroupNumber (int) : The number of a group of images
rlnGroupScaleCorrection (double) : Intensity-scale correction for a group of images
rlnHasConverged (bool) : Flag to indicate that the optimization has converged
rlnHasHighFscAtResolLimit (bool) : Flag to indicate that the FSC at the resolution limit is significant
rlnHasLargeSizeIncreaseIterationsAgo (int) : How many iterations have passed since the last large increase in image size
rlnHealpixOrder (int) : Healpix order for the sampling of the first two Euler angles (rot, tilt) on the 3D sphere
rlnHelicalCentralProportion (double) : Only expand this central fraction of the Z axis when imposing real-space helical symmetry
rlnHelicalKeepTiltPriorFixed (bool) : Flag to indicate that helical tilt priors are kept fixed (at 90 degrees) in global angular searches
rlnHelicalMaskTubeInnerDiameter (double) : Inner diameter of helical tubes in Angstroms (for masks of helical references and particles)
rlnHelicalMaskTubeOuterDiameter (double) : Outer diameter of helical tubes in Angstroms (for masks of helical references and particles)
rlnHelicalOffsetStep (double) : Step size for the searches of offsets along helical axis (in Angstroms)
rlnHelicalRise (double) : The helical rise (translation per subunit) in Angstroms
rlnHelicalRiseInitial (double) : The initial helical rise (translation per subunit) in Angstroms before refinement
rlnHelicalRiseInitialStep (double) : Initial step of helical rise search (in Angstroms)
rlnHelicalRiseMax (double) : Maximum helical rise (in Angstroms)
rlnHelicalRiseMin (double) : Minimum helical rise (in Angstroms)
rlnHelicalSigmaDistance (double) : Sigma of distance along the helical tracks
rlnHelicalSymmetryLocalRefinement (bool) : Flag to indicate that local refinement of helical parameters should be performed
rlnHelicalTrackLength (double) : Distance from the position of this helical segment to the starting point of the tube
rlnHelicalTubeID (int) : Helical tube ID for a helical segment
rlnHelicalTubePitch (double) : Cross-over distance for a helical segment (A)
rlnHelicalTwist (double) : The helical twist (rotation per subunit) in degrees
rlnHelicalTwistInitial (double) : The intial helical twist (rotation per subunit) in degrees before refinement
rlnHelicalTwistInitialStep (double) : Initial step of helical twist search (in degrees)
rlnHelicalTwistMax (double) : Maximum helical twist (in degrees, + for right-handedness)
rlnHelicalTwistMin (double) : Minimum helical twist (in degrees, + for right-handedness)
rlnHighresLimitExpectation (double) : High-resolution-limit (in Angstrom) for the expectation step
rlnHighresLimitSGD (double) : High-resolution-limit (in Angstrom) for Stochastic Gradient Descent
rlnIgnoreHelicalSymmetry (bool) : Flag to indicate that helical symmetry is ignored in 3D reconstruction
rlnImageDimensionality (int) : Dimensionality of data stored in an image (i.e. 2 or 3)
rlnImageId (int) : ID (i.e. a unique number) of an image
rlnImageName (string) : Name of an image
rlnImageOriginalName (string) : Original name of an image
rlnImageSize (int) : Size of an image (in pixels)
rlnImageSizeX (int) : Size of an image in the X-direction (in pixels)
rlnImageSizeY (int) : Size of an image in the Y-direction (in pixels)
rlnImageSizeZ (int) : Size of an image in the Z-direction (in pixels)
rlnImageWeight (double) : Relative weight of an image
rlnIncrementImageSize (int) : Number of Fourier shells to be included beyond the resolution where SSNR^MAP drops below 1
rlnIs3DSampling (bool) : Flag to indicate this concerns a 3D sampling
rlnIs3DTranslationalSampling (bool) : Flag to indicate this concerns a x,y,z-translational sampling
rlnIsFlip (bool) : Flag to indicate that an image should be mirrored
rlnIsHelix (bool) : Flag to indicate that helical refinement should be performed
rlnJoinHalvesUntilThisResolution (double) : Resolution (in Angstrom) to join the two random half-reconstructions to prevent their diverging orientations (for C-symmetries)
rlnKullbackLeiblerDivergence (double) : Kullback-Leibler divergence for a particle
rlnKurtosisExcessValue (double) : Kurtosis excess (4th moment - 3) for the pixel values in an image
rlnLensStability (double) : Lens stability (in ppm)
rlnLocalSymmetryFile (string) : Local symmetry description file containing list of masks and their operators
rlnLogAmplitudesIntercept (double) : Y-value for Guinier plot: the fitted plateau of the logarithm of the radially averaged amplitudes
rlnLogAmplitudesMTFCorrected (double) : Y-value for Guinier plot: the logarithm of the radially averaged amplitudes after MTF correction
rlnLogAmplitudesOriginal (double) : Y-value for Guinier plot: the logarithm of the radially averaged amplitudes of the input map
rlnLogAmplitudesSharpened (double) : Y-value for Guinier plot: the logarithm of the radially averaged amplitudes after sharpening
rlnLogAmplitudesWeighted (double) : Y-value for Guinier plot: the logarithm of the radially averaged amplitudes after FSC-weighting
rlnLogLikeliContribution (double) : Contribution of a particle to the log-likelihood target function
rlnLogLikelihood (double) : Value of the log-likelihood target function
rlnLongitudinalDisplacement (double) : Longitudinal displacement (in Angstroms)
rlnMagnification (double) : Magnification at the detector (in times)
rlnMagnificationCorrection (double) : Magnification correction value for an image
rlnMagnificationSearchRange (double) : Search range for magnification correction
rlnMagnificationSearchStep (double) : Step size for magnification correction
rlnMaskName (string) : Name of an image that contains a [0,1] mask
rlnMatrix_1_1 (double) : Matrix element (1,1) of a 3x3 matrix
rlnMatrix_1_2 (double) : Matrix element (1,2) of a 3x3 matrix
rlnMatrix_1_3 (double) : Matrix element (1,3) of a 3x3 matrix
rlnMatrix_2_1 (double) : Matrix element (2,1) of a 3x3 matrix
rlnMatrix_2_2 (double) : Matrix element (2,1) of a 3x3 matrix
rlnMatrix_2_3 (double) : Matrix element (2,1) of a 3x3 matrix
rlnMatrix_3_1 (double) : Matrix element (3,1) of a 3x3 matrix
rlnMatrix_3_2 (double) : Matrix element (3,1) of a 3x3 matrix
rlnMatrix_3_3 (double) : Matrix element (3,1) of a 3x3 matrix
rlnMaxNumberOfPooledParticles (int) : Maximum number particles that are processed together to speed up calculations
rlnMaxValueProbDistribution (double) : Maximum value of the (normalised) probability function for a particle
rlnMaximumCoarseImageSize (int) : Maximum size of the images to be used in the first pass of the adaptive oversampling strategy (may be smaller than the original image size)
rlnMaximumValue (double) : Maximum value for the pixels in an image
rlnMicrographBinning (double) : Micrograph binning factor
rlnMicrographDefectFile (string) : Name of a defect list file
rlnMicrographDoseRate (double) : Dose rate in electrons per square Angstrom per frame
rlnMicrographEndFrame (int) : End frame of a motion model
rlnMicrographFrameNumber (int) : Micrograph frame number
rlnMicrographGainName (string) : Name of a gain reference
rlnMicrographId (int) : ID (i.e. a unique number) of a micrograph
rlnMicrographMetadata (string) : Name of a micrograph metadata file
rlnMicrographMovieName (string) : Name of a micrograph movie stack
rlnMicrographName (string) : Name of a micrograph
rlnMicrographNameNoDW (string) : Name of a micrograph without dose weighting
rlnMicrographOriginalPixelSize (double) : Pixel size of original movie before binning in Angstrom/pixel.
rlnMicrographPreExposure (double) : Pre-exposure dose in electrons per square Angstrom
rlnMicrographShiftX (double) : X shift of a (patch of) micrograph
rlnMicrographShiftY (double) : Y shift of a (patch of) micrograph
rlnMicrographStartFrame (int) : Start frame of a motion model
rlnMicrographTiltAngle (double) : Tilt angle (in degrees) used to collect a micrograph
rlnMicrographTiltAxisDirection (double) : Direction of the tilt-axis (in degrees) used to collect a micrograph
rlnMicrographTiltAxisOutOfPlane (double) : Out-of-plane angle (in degrees) of the tilt-axis used to collect a micrograph (90=in-plane)
rlnMinRadiusNnInterpolation (int) : Minimum radius for NN-interpolation (in Fourier pixels), for smaller radii linear int. is used
rlnMinimumValue (double) : Minimum value for the pixels in an image
rlnModelStarFile (string) : STAR file with metadata for the model that is being refined
rlnModelStarFile2 (string) : STAR file with metadata for the second model that is being refined (from random halves of the data)
rlnMotionModelCoeff (double) : A coefficient of a motion model
rlnMotionModelCoeffsIdx (int) : Index of a coefficient of a motion model
rlnMotionModelVersion (int) : Version of micrograph motion model
rlnMovieFrameNumber (int) : Number of a movie frame
rlnMovieFramesRunningAverage (int) : Number of movie frames inside the running average that will be used for movie-refinement
rlnMtfValue (double) : Value of the detectors modulation transfer function (between 0 and 1)
rlnNormCorrection (double) : Normalisation correction value for an image
rlnNormCorrectionAverage (double) : Average value (over all images) of the normalisation correction values
rlnNrBodies (int) : The number of independent rigid bodies to be refined in multi-body refinement
rlnNrClasses (int) : The number of references (i.e. classes) to be used in refinement
rlnNrGroups (int) : The number of different groups of images (each group has its own noise spectrum, and intensity-scale correction)
rlnNrHelicalAsymUnits (int) : How many new helical asymmetric units are there in each box
rlnNrOfFrames (int) : Number of movie frames that were collected for this particle
rlnNrOfSignificantSamples (int) : Number of orientational/class assignments (for a particle) with sign.probabilities in the 1st pass of adaptive oversampling
rlnNumberOfIterWithoutChangingAssignments (int) : Number of iterations that have passed without large changes in orientation and class assignments
rlnNumberOfIterWithoutResolutionGain (int) : Number of iterations that have passed without a gain in resolution
rlnNumberOfIterations (int) : Maximum number of iterations to be performed
rlnOffsetRange (double) : Search range for the origin offsets (in Angstroms)
rlnOffsetStep (double) : Step size for the searches in the origin offsets (in Angstroms)
rlnOrientSamplingStarFile (string) : STAR file with metadata for the orientational sampling
rlnOrientationDistribution (double) : Probability Density Function of the orientations (i.e. fraction of images assigned to each orient)
rlnOrientationalPriorMode (int) : Mode for prior distributions on the orientations (0=no prior; 1=(rot,tilt,psi); 2=(rot,tilt); 3=rot; 4=tilt; 5=psi)
rlnOrientationsID (int) : ID (i.e. a unique number) for an orientation
rlnOriginX (double) : X-coordinate (in pixels) for the origin of rotation
rlnOriginXPrior (double) : Center of the prior on the X-coordinate (in pixels) for the origin of rotation
rlnOriginY (double) : Y-coordinate (in pixels) for the origin of rotation
rlnOriginYPrior (double) : Center of the prior on the X-coordinate (in pixels) for the origin of rotation
rlnOriginZ (double) : Z-coordinate (in pixels) for the origin of rotation
rlnOriginZPrior (double) : Center of the prior on the X-coordinate (in pixels) for the origin of rotation
rlnOriginalImageSize (int) : Original size of the images (in pixels)
rlnOriginalParticleName (string) : Original name for a particles
rlnOutputRootName (string) : Rootname for all output files (this may include a directory structure, which should then exist)
rlnOverallAccuracyRotations (double) : Overall accuracy of the rotational assignments (in degrees)
rlnOverallAccuracyTranslations (double) : Overall accuracy of the translational assignments (in pixels)
rlnOverallFourierCompleteness (double) : Fraction of all Fourier components up to the current resolution with SNR>1
rlnPaddingFactor (double) : Oversampling factor for Fourier transforms of the references
rlnParticleDiameter (double) : Diameter of the circular mask to be applied to all experimental images (in Angstroms)
rlnParticleFigureOfMerit (double) : Developmental FOM for a particle
rlnParticleId (int) : ID (i.e. a unique number) for a particle
rlnParticleName (string) : Name for a particle
rlnParticleNumber (int) : Number of particles
rlnParticleSelectZScore (double) : Sum of Z-scores from particle_select. High Z-scores are likely to be outliers.
rlnPerFrameCumulativeWeight (double) : Sum of the resolution-dependent relative weights from the first frame until the given frame
rlnPerFrameRelativeWeight (double) : The resolution-dependent relative weights for a given frame
rlnPhaseShift (double) : Phase-shift from a phase-plate (in degrees)
rlnPipeLineEdgeFromNode (string) : Name of the origin of an edge
rlnPipeLineEdgeProcess (string) : Name of the destination of an edge
rlnPipeLineEdgeToNode (string) : Name of the to-Node in an edge
rlnPipeLineJobCounter (int) : Number of the last job in the pipeline
rlnPipeLineNodeName (string) : Name of a Node in the pipeline
rlnPipeLineNodeType (int) : Type of a Node in the pipeline
rlnPipeLineProcessAlias (string) : Alias of a Process in the pipeline
rlnPipeLineProcessName (string) : Name of a Process in the pipeline
rlnPipeLineProcessStatus (int) : Status of a Process in the pipeline (running, scheduled, finished or cancelled)
rlnPipeLineProcessType (int) : Type of a Process in the pipeline
rlnPixelSize (double) : Size of the pixels in the references and images (in Angstroms)
rlnPsiStep (double) : Step size (in degrees) for the sampling of the in-plane rotation angle (psi)
rlnRadiusMaskExpImages (int) : Radius of the circular mask to be applied to all experimental images (in Angstroms)
rlnRadiusMaskMap (int) : Radius of the spherical mask to be applied to all references (in Angstroms)
rlnRandomSeed (int) : Seed (i.e. a number) for the random number generator
rlnRandomSubset (int) : Random subset to which this particle belongs
rlnRandomiseFrom (double) : Resolution (in A) from which the phases are randomised in the postprocessing step
rlnReconstructImageName (string) : Name of an image to be used for reconstruction only
rlnReferenceDimensionality (int) : Dimensionality of the references (2D/3D)
rlnReferenceImage (string) : Name of a reference image
rlnReferenceSigma2 (double) : Spherical average of the estimated power in the noise of a reference
rlnReferenceSpectralPower (double) : Spherical average of the power of the reference
rlnReferenceTau2 (double) : Spherical average of the estimated power in the signal of a reference
rlnRefsAreCtfCorrected (bool) : Flag to indicate that the input references have been CTF-amplitude corrected
rlnResolution (double) : Resolution (in 1/Angstroms)
rlnResolutionInversePixel (double) : Resolution (in 1/pixel, Nyquist = 0.5)
rlnResolutionSquared (double) : X-value for Guinier plot: squared resolution in 1/Angstrom^2
rlnSGDGradientImage (string) : Name of image containing the SGD gradient
rlnSamplingPerturbFactor (double) : Factor for random perturbation on the orientational sampling (between 0 no perturbation and 1 very strong perturbation)
rlnSamplingPerturbInstance (double) : Random instance of the random perturbation on the orientational sampling
rlnSamplingRate (double) : Sampling rate of an image (in Angstrom/pixel)
rlnSamplingRateX (double) : Sampling rate in X-direction of an image (in Angstrom/pixel)
rlnSamplingRateY (double) : Sampling rate in Y-direction of an image (in Angstrom/pixel)
rlnSamplingRateZ (double) : Sampling rate in Z-direction of an image (in Angstrom/pixel)
rlnSelected (int) : Flag whether an entry in a metadatatable is selected (1) in the viewer or not (0)
rlnSgdFinalIterations (int) : Number of final SGD iterations (at rlnSgdFinalResolution and with rlnSgdFinalSubsetSize)
rlnSgdFinalResolution (double) : Resolution (in A) to use during the final SGD iterations
rlnSgdFinalSubsetSize (int) : Number of particles in a mini-batch (subset) during the final SGD iteration
rlnSgdInBetweenIterations (int) : Number of SGD iteration in between the initial ones to the final ones (with linear interpolation of resolution and subset size)
rlnSgdInitialIterations (int) : Number of initial SGD iterations (at rlnSgdInitialResolution and with rlnSgdInitialSubsetSize)
rlnSgdInitialResolution (double) : Resolution (in A) to use during the initial SGD iterations
rlnSgdInitialSubsetSize (int) : Number of particles in a mini-batch (subset) during the initial SGD iterations
rlnSgdMaxSubsets (int) : Stop SGD after doing this many subsets (possibly spanning more than 1 iteration)
rlnSgdMuFactor (double) : The mu-parameter that controls the momentum of the SGD gradients
rlnSgdSigma2FudgeHalflife (int) : After processing this many particles the multiplicative factor for the noise variance will have halved
rlnSgdSigma2FudgeInitial (double) : The variance of the noise will initially be multiplied with this value (larger than 1)
rlnSgdSkipAnneal (bool) : Option to switch off annealing of multiple references in SGD
rlnSgdStepsize (double) : Stepsize in SGD updates)
rlnSgdSubsetSize (int) : The number of particles in the random subsets for SGD
rlnSgdWriteEverySubset (int) : Every this many iterations the model is written to disk in SGD
rlnSigma2Noise (double) : Spherical average of the standard deviation in the noise (sigma)
rlnSigmaOffsets (double) : Standard deviation in the origin offsets (in Angstroms)
rlnSigmaPriorPsiAngle (double) : Standard deviation of the prior on the psi (i.e. third Euler) angle
rlnSigmaPriorRotAngle (double) : Standard deviation of the prior on the rot (i.e. first Euler) angle
rlnSigmaPriorTiltAngle (double) : Standard deviation of the prior on the tilt (i.e. second Euler) angle
rlnSignalToNoiseRatio (double) : Spectral signal-to-noise ratio for a reference
rlnSkewnessValue (double) : Skewness (3rd moment) for the pixel values in an image
rlnSmallestChangesClasses (int) : Smallest changes thus far in the optimal class assignments (in numer of particles).
rlnSmallestChangesOffsets (double) : Smallest changes thus far in the optimal offset assignments (in pixels).
rlnSmallestChangesOrientations (double) : Smallest changes thus far in the optimal orientation assignments (in degrees).
rlnSolventMask2Name (string) : Name of a secondary solvent mask (e.g. to flatten density inside an icosahedral virus)
rlnSolventMaskName (string) : Name of an image that contains a (possibly soft) mask for the solvent area (values=0 for solvent, values =1 for protein)
rlnSortedIndex (int) : Index of a metadata entry after sorting (first sorted index is 0).
rlnSpectralIndex (int) : Spectral index (i.e. distance in pixels to the origin in Fourier space)
rlnSpectralOrientabilityContribution (double) : Spectral SNR contribution to the orientability of individual particles
rlnSphericalAberration (double) : Spherical aberration (in millimeters)
rlnSsnrMap (double) : Spectral signal-to-noise ratio as defined for MAP estimation (SSNR^MAP)
rlnStandardDeviationValue (double) : Standard deviation for the pixel values in an image
rlnStarFileMovieParticles (string) : Filename of a STAR file with movie-particles in it
rlnSymmetryGroup (string) : Symmetry group (e.g., C1, D7, I2, I5, etc.)
rlnTau2FudgeFactor (double) : Regularisation parameter with which estimates for the power in the references will be multiplied (T in original paper)
rlnTauSpectrumName (string) : Name of a STAR file that holds a tau2-spectrum
rlnTiltAngleLimit (double) : Values to which to limit the tilt angles (positive for keeping side views, negative for keeping top views)
rlnTransversalDisplacement (double) : Transversal displacement (in Angstroms)
rlnUnfilteredMapHalf1 (string) : Name of the unfiltered map from halfset 1
rlnUnfilteredMapHalf2 (string) : Name of the unfiltered map from halfset 2
rlnUseTooCoarseSampling (bool) : Flag to indicate that the angular sampling on the sphere will be one step coarser than needed to speed up calculations
rlnVoltage (double) : Voltage of the microscope (in kV)
rlnWidthMaskEdge (int) : Width (in pixels) of the soft edge for spherical/circular masks to be used for solvent flattening
