「mrcImageSimilarityEstimate」の版間の差分
(ページの作成:「'''mrcImageSimilarityEstimate'''とはEosのコマンドである。 == オプション一覧 == ===メインオプション=== <table border="1"> <tr> ...」) |
|||
(同じ利用者による、間の8版が非表示) | |||
行14: | 行14: | ||
<td>-i</td> | <td>-i</td> | ||
<td>必須</td> | <td>必須</td> | ||
− | <td>入力ファイル</td> | + | <td>入力ファイル: [[mrcImage]](FFT)</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
行20: | 行20: | ||
<td>-o</td> | <td>-o</td> | ||
<td>選択</td> | <td>選択</td> | ||
− | <td>出力ファイル</td> | + | <td>出力ファイル: [[ASCII]]</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
行26: | 行26: | ||
<td>-oCor</td> | <td>-oCor</td> | ||
<td>選択</td> | <td>選択</td> | ||
− | <td>出力ファイル</td> | + | <td>出力ファイル: [[mrcImage]]</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-ref</td> | <td>-ref</td> | ||
− | <td> | + | <td>必須</td> |
− | <td> | + | <td>参照ファイルリスト: [[ASCII]]</td> |
<td>stdin</td> | <td>stdin</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td>- | + | <td>-corfilename</td> |
<td>選択</td> | <td>選択</td> | ||
− | <td> | + | <td>相関ファイルリスト: [[ASCII]]</td> |
<td>stdin</td> | <td>stdin</td> | ||
</tr> | </tr> | ||
行50: | 行50: | ||
<td>-ctfinfo</td> | <td>-ctfinfo</td> | ||
<td>選択</td> | <td>選択</td> | ||
− | <td> | + | <td>CTF情報: [[ASCII]]</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
行72: | 行72: | ||
</tr> | </tr> | ||
</table> | </table> | ||
+ | <div>-o, -ctfinfo は入力が必要</div> | ||
+ | <div>-corfilename は-ref と同じファイル数にする必要がある</div> | ||
+ | <br> | ||
===モードの詳細=== | ===モードの詳細=== | ||
行84: | 行87: | ||
</tr> | </tr> | ||
</table> | </table> | ||
+ | <br> | ||
===-cormode の詳細=== | ===-cormode の詳細=== | ||
行112: | 行116: | ||
</tr> | </tr> | ||
</table> | </table> | ||
+ | <br> | ||
− | + | ===-ref のフォーマット=== | |
− | + | <pre> | |
+ | 2Dファイル1 | ||
+ | 2Dファイル2 | ||
+ | . | ||
+ | . | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | ===-ctfinfoのフォーマット=== | ||
+ | <pre> | ||
+ | defocus Cs kV AmplitudeContrast | ||
+ | </pre> | ||
+ | <br> | ||
== 実行例 == | == 実行例 == | ||
+ | ===[[:Media:Input-1VOM-N-Rot3-2D.fft|入力ファイル]]の画像=== | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td><p align="Center">[[画像:Input-1VOM-N-Rot3-2D-FFT.png]]<br> | ||
+ | [[mrcFFTExpression]](m=1)にて表示<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">57.2237 (78, 32, 0)<br> | ||
+ | 520564 (0, 0, 0)<br> | ||
+ | 4898.64<br> | ||
+ | 12077.5<br> | ||
+ | 150.969<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ===参照ファイルのデータ=== | ||
+ | <pre> | ||
+ | Input-1VOM-2D.mrc | ||
+ | Input-1VOM-Rot-2D.mrc | ||
+ | Input-1VOM-Rot1-2D.mrc | ||
+ | Input-1VOM-Rot2-2D.mrc | ||
+ | Input-1VOM-Rot3-2D.mrc | ||
+ | Input-1VOM-Rot4-2D.mrc | ||
+ | |||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-2D.mrc|Input-1VOM-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">0 (0, 0, 0)<br> | ||
+ | 49749.7 (27, 28, 0)<br> | ||
+ | 7212.9<br> | ||
+ | 8827.15<br> | ||
+ | 110.339<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-Rot-2D.mrc|Input-1VOM-Rot-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-Rot-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-609.552 (68, 18, 0)<br> | ||
+ | 43476 (45, 47, 0)<br> | ||
+ | 6507.15<br> | ||
+ | 7376.01<br> | ||
+ | 92.2001<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-Rot1-2D.mrc|Input-1VOM-Rot1-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-Rot1-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-2.31309e-06 (29, 7, 0)<br> | ||
+ | 49749.2 (52, 51, 0)<br> | ||
+ | 6572.32<br> | ||
+ | 8769.91<br> | ||
+ | 109.624<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-Rot2-2D.mrc|Input-1VOM-Rot2-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-Rot2-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">0 (0, 0, 0)<br> | ||
+ | 49749.2 (28, 52, 0)<br> | ||
+ | 6572.32<br> | ||
+ | 8769.91<br> | ||
+ | 109.624<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-Rot3-2D.mrc|Input-1VOM-Rot3-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-Rot3-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.70846e-06 (56, 57, 0)<br> | ||
+ | 40287.6 (43, 43, 0)<br> | ||
+ | 6509.38<br> | ||
+ | 8494.21<br> | ||
+ | 106.178<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>[[:Media:Input-1VOM-Rot4-2D.mrc|Input-1VOM-Rot4-2D.mrc]]の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Input-1VOM-Rot4-2D.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">0 (0, 0, 0)<br> | ||
+ | 40287.6 (43, 36, 0)<br> | ||
+ | 6509.38<br> | ||
+ | 8494.21<br> | ||
+ | 106.178<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ===オプション -ctfinfo=== | ||
+ | <div>以下のデータで実行</div> | ||
+ | <pre> | ||
+ | 27000.000000 2.100000 200.000000 0.100000 | ||
+ | |||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 0 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 594983936.000000 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 594983936.000000 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 416067136.000000 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 693353536.000000 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 701726912.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 730086528.000000 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 844069504.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max:844069504.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 0 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oのデータ</div> | ||
+ | <pre> | ||
+ | Input-1VOM-N-Rot3-2D.fft maxNumber: 5.000000 max: 844069504.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 0 | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>以降は-ctfinfo を設定して実行</div> | ||
+ | |||
+ | ===オプション -oCor=== | ||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.41115e+09 (3, 78, 0)<br> | ||
+ | 8.4407e+08 (33, 41, 0)<br> | ||
+ | -3.38855e+08<br> | ||
+ | 5.16823e+08<br> | ||
+ | 6.46029e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <div>参照ファイルの最後との相関を行う。</div> | ||
+ | <br> | ||
+ | |||
+ | ===オプション -corfilename=== | ||
+ | <div>以下のデータで実行</div> | ||
+ | <pre> | ||
+ | Cor.mrc | ||
+ | Cor-Rot.mrc | ||
+ | Cor-Rot1.mrc | ||
+ | Cor-Rot2.mrc | ||
+ | Cor-Rot3.mrc | ||
+ | Cor-Rot4.mrc | ||
+ | |||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata1-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.78706e+09 (1, 0, 0)<br> | ||
+ | 5.94984e+08 (31, 39, 0)<br> | ||
+ | -3.75478e+08<br> | ||
+ | 5.55949e+08<br> | ||
+ | 6.94936e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor-Rot.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata2-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.96178e+09 (0, 0, 0)<br> | ||
+ | 4.16067e+08 (19, 26, 0)<br> | ||
+ | -3.38739e+08<br> | ||
+ | 5.38895e+08<br> | ||
+ | 6.73619e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor-Rot1.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata3-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.84834e+09 (2, 2, 0)<br> | ||
+ | 6.93354e+08 (52, 44, 0)<br> | ||
+ | -3.42132e+08<br> | ||
+ | 5.72357e+08<br> | ||
+ | 7.15446e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor-Rot2.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata4-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.78266e+09 (6, 3, 0)<br> | ||
+ | 7.01727e+08 (33, 41, 0)<br> | ||
+ | -3.42132e+08<br> | ||
+ | 6.59549e+08<br> | ||
+ | 8.24436e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor-Rot3.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata5-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.83911e+09 (78, 77, 0)<br> | ||
+ | 7.30087e+08 (28, 29, 0)<br> | ||
+ | -3.38855e+08<br> | ||
+ | 5.96151e+08<br> | ||
+ | 7.45189e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | <div>Cor-Rot4.mrcの画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata6-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.41115e+09 (3, 78, 0)<br> | ||
+ | 8.4407e+08 (33, 41, 0)<br> | ||
+ | -3.38855e+08<br> | ||
+ | 5.16823e+08<br> | ||
+ | 6.46029e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <div>最後の画像は-oCor と同じになる</div> | ||
+ | <br> | ||
+ | |||
+ | ===オプション -cormode=== | ||
+ | ====cormode=1で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 1 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 3.320063 ( 60.000000 55.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 3.320063 ( 60.000000, 55.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 3.700860 ( 75.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 3.524074 ( 10.000000, 58.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 4.016609 ( 36.000000, 74.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 3.594912 ( 71.000000, 37.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 4.224592 ( 63.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max: 4.224592 ( 63.000000, 41.000000, 0.000000) correlation mode 1 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m1-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-3.71458 (8, 56, 0)<br> | ||
+ | 4.22459 (63, 41, 0)<br> | ||
+ | -0.0125<br> | ||
+ | 0.999922<br> | ||
+ | 0.012499<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=2で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 2 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 14465.583984 ( 32.000000 32.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 14465.583984 ( 32.000000, 32.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 13782.997070 ( 34.000000, 34.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 14514.052734 ( 49.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 17554.871094 ( 38.000000, 27.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 18164.224609 ( 31.000000, 28.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 16113.549805 ( 32.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 4.000000 max: 18164.224609 ( 31.000000, 28.000000, 0.000000) correlation mode 2 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m2-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-20418.3 (76, 79, 0)<br> | ||
+ | 18164.2 (31, 28, 0)<br> | ||
+ | -2058.08<br> | ||
+ | 5706.55<br> | ||
+ | 71.3319<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=3で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 3 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 0.019808 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 0.019808 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 0.015354 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 0.025332 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 0.025638 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 0.026932 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 0.031137 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max: 0.031137 ( 33.000000, 41.000000, 0.000000) correlation mode 3 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m3-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-0.052056 (3, 78, 0)<br> | ||
+ | 0.0311368 (33, 41, 0)<br> | ||
+ | -0.0125<br> | ||
+ | 0.0190651<br> | ||
+ | 0.000238313<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=16で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 16 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 970461568.000000 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 970461568.000000 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 754806144.000000 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 1035485184.000000 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 1043858560.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 1068941312.000000 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 1182924416.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max:1182924416.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 16 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m16-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-1.0723e+09 (3, 78, 0)<br> | ||
+ | 1.18292e+09 (33, 41, 0)<br> | ||
+ | -1.14038<br> | ||
+ | 5.16823e+08<br> | ||
+ | 6.46029e+06<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=17で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 17 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 3.332563 ( 60.000000 55.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 3.332563 ( 60.000000, 55.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 3.713360 ( 75.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 3.536574 ( 10.000000, 58.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 4.029109 ( 36.000000, 74.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 3.607412 ( 71.000000, 37.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 4.237092 ( 63.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max: 4.237092 ( 63.000000, 41.000000, 0.000000) correlation mode 17 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m17-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-3.70208 (8, 56, 0)<br> | ||
+ | 4.23709 (63, 41, 0)<br> | ||
+ | -2.11159e-10<br> | ||
+ | 0.999922<br> | ||
+ | 0.012499<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=18で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 18 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 16632.027344 ( 32.000000 32.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 16632.027344 ( 32.000000, 32.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 15840.724609 ( 34.000000, 34.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 16582.058594 ( 49.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 19622.876953 ( 38.000000, 27.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 20222.302734 ( 31.000000, 28.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 18171.628906 ( 32.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 4.000000 max: 20222.302734 ( 31.000000, 28.000000, 0.000000) correlation mode 18 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m18-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-18360.3 (76, 79, 0)<br> | ||
+ | 20222.3 (31, 28, 0)<br> | ||
+ | 2.73261e-06<br> | ||
+ | 5706.55<br> | ||
+ | 71.3319<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> | ||
+ | |||
+ | ====cormode=19で実行==== | ||
+ | <div>出力結果</div> | ||
+ | <pre> | ||
+ | Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main | ||
+ | Image Number 6 in main | ||
+ | correlation mode: 19 in lmrcImageSimilarityEstimate | ||
+ | maxNumber 0.000000, max 0.032308 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 0, max: 0.032308 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 1, max: 0.027854 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 2, max: 0.037832 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 3, max: 0.038138 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 4, max: 0.039432 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | i: 5, max: 0.043637 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate | ||
+ | maxNumber: 5.000000 max: 0.043637 ( 33.000000, 41.000000, 0.000000) correlation mode 19 in main | ||
+ | </pre> | ||
+ | <br> | ||
+ | |||
+ | <div>-oCor の画像</div> | ||
+ | <table> | ||
+ | <tr> | ||
+ | <td>[[画像:Outdata-m19-mrcImageSimilarityEstimate.png]]</td> | ||
+ | <td><p align="left">最小<br> | ||
+ | 最大<br> | ||
+ | 平均値<br> | ||
+ | 標準偏差<br> | ||
+ | 標準誤差<br></p> | ||
+ | </td> | ||
+ | <td><p align="left">-0.039556 (3, 78, 0)<br> | ||
+ | 0.0436368 (33, 41, 0)<br> | ||
+ | 2.04503e-11<br> | ||
+ | 0.0190651<br> | ||
+ | 0.000238313<br></p> | ||
+ | </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | <br> |
2014年3月7日 (金) 02:04時点における最新版
mrcImageSimilarityEstimateとはEosのコマンドである。
オプション一覧
メインオプション
オプション | 必須項目/選択項目 | 説明 | デフォルト |
---|---|---|---|
-i | 必須 | 入力ファイル: mrcImage(FFT) | NULL |
-o | 選択 | 出力ファイル: ASCII | NULL |
-oCor | 選択 | 出力ファイル: mrcImage | NULL |
-ref | 必須 | 参照ファイルリスト: ASCII | stdin |
-corfilename | 選択 | 相関ファイルリスト: ASCII | stdin |
-cormode | 選択 | cormode | 0 |
-ctfinfo | 選択 | CTF情報: ASCII | NULL |
-c | 選択 | コンフィグファイル設定 | NULL |
-m | 選択 | モードを設定 | 0 |
-h | 選択 | ヘルプを表示 |
モードの詳細
モード | 説明 |
---|---|
0 |
-cormode の詳細
モード | 説明 |
---|---|
0 | Normal Correlation FxG* |
1 | Phase Correlation FxG*/ |FxG*| |
2 | Phase Correlation FxG*/sqrt(|FxG*|) |
3 | Normalized Normal Correlation FxG*/|F||G|) |
16 | (0, 0)=0 |
-ref のフォーマット
2Dファイル1 2Dファイル2 . .
-ctfinfoのフォーマット
defocus Cs kV AmplitudeContrast
実行例
入力ファイルの画像
|
最小 最大 |
57.2237 (78, 32, 0) 520564 (0, 0, 0) |
参照ファイルのデータ
Input-1VOM-2D.mrc Input-1VOM-Rot-2D.mrc Input-1VOM-Rot1-2D.mrc Input-1VOM-Rot2-2D.mrc Input-1VOM-Rot3-2D.mrc Input-1VOM-Rot4-2D.mrc
最小 最大 |
0 (0, 0, 0) 49749.7 (27, 28, 0) |
最小 最大 |
-609.552 (68, 18, 0) 43476 (45, 47, 0) |
最小 最大 |
-2.31309e-06 (29, 7, 0) 49749.2 (52, 51, 0) |
最小 最大 |
0 (0, 0, 0) 49749.2 (28, 52, 0) |
最小 最大 |
-1.70846e-06 (56, 57, 0) 40287.6 (43, 43, 0) |
最小 最大 |
0 (0, 0, 0) 40287.6 (43, 36, 0) |
オプション -ctfinfo
27000.000000 2.100000 200.000000 0.100000
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 0 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 594983936.000000 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 594983936.000000 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 416067136.000000 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 693353536.000000 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 701726912.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 730086528.000000 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 844069504.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max:844069504.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 0 in main
Input-1VOM-N-Rot3-2D.fft maxNumber: 5.000000 max: 844069504.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 0
オプション -oCor
最小 最大 |
-1.41115e+09 (3, 78, 0) 8.4407e+08 (33, 41, 0) |
オプション -corfilename
Cor.mrc Cor-Rot.mrc Cor-Rot1.mrc Cor-Rot2.mrc Cor-Rot3.mrc Cor-Rot4.mrc
最小 最大 |
-1.78706e+09 (1, 0, 0) 5.94984e+08 (31, 39, 0) |
最小 最大 |
-1.96178e+09 (0, 0, 0) 4.16067e+08 (19, 26, 0) |
最小 最大 |
-1.84834e+09 (2, 2, 0) 6.93354e+08 (52, 44, 0) |
最小 最大 |
-1.78266e+09 (6, 3, 0) 7.01727e+08 (33, 41, 0) |
最小 最大 |
-1.83911e+09 (78, 77, 0) 7.30087e+08 (28, 29, 0) |
最小 最大 |
-1.41115e+09 (3, 78, 0) 8.4407e+08 (33, 41, 0) |
オプション -cormode
cormode=1で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 1 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 3.320063 ( 60.000000 55.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 3.320063 ( 60.000000, 55.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 3.700860 ( 75.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 3.524074 ( 10.000000, 58.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 4.016609 ( 36.000000, 74.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 3.594912 ( 71.000000, 37.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 4.224592 ( 63.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max: 4.224592 ( 63.000000, 41.000000, 0.000000) correlation mode 1 in main
最小 最大 |
-3.71458 (8, 56, 0) 4.22459 (63, 41, 0) |
cormode=2で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 2 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 14465.583984 ( 32.000000 32.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 14465.583984 ( 32.000000, 32.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 13782.997070 ( 34.000000, 34.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 14514.052734 ( 49.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 17554.871094 ( 38.000000, 27.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 18164.224609 ( 31.000000, 28.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 16113.549805 ( 32.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 4.000000 max: 18164.224609 ( 31.000000, 28.000000, 0.000000) correlation mode 2 in main
最小 最大 |
-20418.3 (76, 79, 0) 18164.2 (31, 28, 0) |
cormode=3で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 3 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 0.019808 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 0.019808 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 0.015354 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 0.025332 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 0.025638 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 0.026932 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 0.031137 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max: 0.031137 ( 33.000000, 41.000000, 0.000000) correlation mode 3 in main
最小 最大 |
-0.052056 (3, 78, 0) 0.0311368 (33, 41, 0) |
cormode=16で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 16 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 970461568.000000 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 970461568.000000 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 754806144.000000 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 1035485184.000000 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 1043858560.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 1068941312.000000 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 1182924416.000000 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max:1182924416.000000 ( 33.000000, 41.000000, 0.000000) correlation mode 16 in main
最小 最大 |
-1.0723e+09 (3, 78, 0) 1.18292e+09 (33, 41, 0) |
cormode=17で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 17 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 3.332563 ( 60.000000 55.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 3.332563 ( 60.000000, 55.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 3.713360 ( 75.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 3.536574 ( 10.000000, 58.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 4.029109 ( 36.000000, 74.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 3.607412 ( 71.000000, 37.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 4.237092 ( 63.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max: 4.237092 ( 63.000000, 41.000000, 0.000000) correlation mode 17 in main
最小 最大 |
-3.70208 (8, 56, 0) 4.23709 (63, 41, 0) |
cormode=18で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 18 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 16632.027344 ( 32.000000 32.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 16632.027344 ( 32.000000, 32.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 15840.724609 ( 34.000000, 34.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 16582.058594 ( 49.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 19622.876953 ( 38.000000, 27.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 20222.302734 ( 31.000000, 28.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 18171.628906 ( 32.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 4.000000 max: 20222.302734 ( 31.000000, 28.000000, 0.000000) correlation mode 18 in main
最小 最大 |
-18360.3 (76, 79, 0) 20222.3 (31, 28, 0) |
cormode=19で実行
Cs 2.100000, defocus 27000.000000, kV 200.000000, mode 1, AoverP 0.100000, Ain 0.000000 in main Image Number 6 in main correlation mode: 19 in lmrcImageSimilarityEstimate maxNumber 0.000000, max 0.032308 ( 31.000000 39.000000 0.000000) in lmrcImageSimilarityEstimate i: 0, max: 0.032308 ( 31.000000, 39.000000, 0.000000) in lmrcImageSimilarityEstimate i: 1, max: 0.027854 ( 19.000000, 26.000000, 0.000000) in lmrcImageSimilarityEstimate i: 2, max: 0.037832 ( 52.000000, 44.000000, 0.000000) in lmrcImageSimilarityEstimate i: 3, max: 0.038138 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate i: 4, max: 0.039432 ( 28.000000, 29.000000, 0.000000) in lmrcImageSimilarityEstimate i: 5, max: 0.043637 ( 33.000000, 41.000000, 0.000000) in lmrcImageSimilarityEstimate maxNumber: 5.000000 max: 0.043637 ( 33.000000, 41.000000, 0.000000) correlation mode 19 in main
最小 最大 |
-0.039556 (3, 78, 0) 0.0436368 (33, 41, 0) |