mrcImage3DWindowing

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mrcImage3DWindowing is Eos's Command that multiplies windowing function to mrcImage(3D).


List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: mrcImage(3D) NULL
-o Essential Output: mrcImage NULL
-center Optional Center: (cx, cy, cz) (0, 0, 0)
-w Optional Width: (wx, wy, wz) (0, 0 , 0)
-r Optional Radius 0
-wr Optional Width for R 0
-wz Optional Width for z 0
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help  

-m details

Value Description
0 GaussianRectangularSolid
1 CosCylindar(+Offset)
2 CosSphere
3 CosSphere(+Offset)


Execution example

Input file's image

Input-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

0

2
0.384947
0.605556

0.00086508

Example of options only essential

Min

Max
Mean
SD

SE

0

0
nan
nan

nan

Since the default w=(0, 0, 0), nothing is output

Option -w

when m=0,

Case: w=(30, 30, 30)

Setting the width of each direction of the Gaussian function to -w. (Width is 1 / e for each direction)

Outdata-w30-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

0

1.01888
0.0335928
0.0897063

0.000128152

Option -center

Case: w=(30, 30, 30), center=(50, 50, 50)

Outdata-w30-center50-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

0

1.97241
0.211832
0.358028

0.000511469

Option -m

Case: m=1, w=(30, 30, 30), center=(50, 50, 50)

Case: No other settings
Outdata-m1-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.384876

1.61512
0.000101475
0.0101141

1.44488e-05

Case: r=10
Outdata-m1r-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.37003

1.62997
0.0205337
0.160314

0.00022902

Case: wr=10
Outdata-m1wr-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.192438

0.807562
0.000716062
0.0127312

1.81875e-05

Case: wz=10, r=10
Outdata-m1wz-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.37003

1.62997
0.0203072
0.156551

0.000223645

Case: m=2, w=(30, 30, 30), center=(50, 50, 50)

Case: No other settings

Min

Max
Mean
SD

SE

0

0
nan
nan

nan

Case: r=20
Outdata-m2r-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

0

2
0.0551567
0.263582

0.000376545

Case: wr=30
Outdata-m2wr-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

0

2
0.0264886
0.18454

0.000263629

Case: m=3

Case: No other settings
Outdata-m3-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0

0.815055
1.66338e-06
0.00116436

1.66338e-06

Case: r=20
Outdata-m3r-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.353868

1.64613
0.0310787
0.202673

0.000289533

Case: wr=30, r=20
Outdata-m3wr-mrcImage3DWindowing.png

Min

Max
Mean
SD

SE

-0.352732

1.64613
0.035894
0.168266

0.000240379