mrcImageSmoothing

mrcImageSmoothing is Eos's Command that performs Nonlinear smoothing mrcImage.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input名: mrcImage	NULL
-o	Optional	Output名: mrcImage	stdout(Standard output by default）
-sx	Optional	x of Kernel Size	3
-sy	Optional	y of Kernel Size	3
-sz	Optional	z of Kernel Size	3
-r	Optional	Radius of Kernel Size	1
-sigma	Optional	Sigma (For m=4)	2.0
-times	Optional	Repeat time	1
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-M	Optional	Mode2	0
-h	Optional	Help

-m details

Value	Description
1	Median filter
2	Mean filter
3	Surface Fit filter
4	Lee-Sigma filter

m=0, at the default setting. Therefore, It is error if -m isn't set.

-M details

Value	Description
0	Kernel is cube. : required argumnent: -sx, -sy, [-sz]
1	Kernel is sphere.(Only mode 1 supported) : required argumnent: -r

Execution example

Example of Option -h

$ mrcImageSmoothing  -h
Usage: /home/people/tacyas/Eos/bin/X86LINUX64/mrcImageSmoothing
Options:
    [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
    [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
    [-sx                 sx                  (3         )] :Optional  :x of Kernel Size
    [-sy                 sy                  (3         )] :Optional  :y of Kernel Size
    [-sz                 sz                  (3         )] :Optional  :z of Kernel Size
    [-r                  r                   (1         )] :Optional  :Radius of Kernel Size
    [-sigma              sigma               (2.0       )] :Optional  :Sigma for Lee-Sigma
    [-m[ode]             mode                (0         )] :Optional  :Mode
    [-M[ode2]            mode2               (0         )] :Optional  :Mode
    [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
>>> Mode <<<< 
    1: Median filter
    2: Mean filter 
    3: Surface Fit filter
    4: Lee-Sigma filter
>>> Mode2 <<<< 
    0: Kernel is cube. : required argumnent: -sx, -sy, [-sz]
    1: Kernel is sphere.(Only mode 1 supported) : required argumnent: -r

Input file's image

Min Max Mean SD SE

-65.0178 94.4699 4.85274 20.4635 0.255794

Option -m, -M

Case: m=1

	Min Max Mean SD SE	-41.8721 65.9659 4.7617 14.3083 0.178854	Case: M=0 with -sx=9,-sy=9 　　－－－－－－＞		Min Max Mean SD SE	-54.6403 54.0815 4.773 13.5848 0.16981
			Case: M=1 with -r=5 　　－－－－－－＞		Min Max Mean SD SE	-54.6403 55.7056 4.73966 13.9823 0.174779

Case: m=2

Min Max Mean SD SE

-41.8721 67.5276 4.82079 13.8056 0.17257

Case: M=0 with -sx=9,-sy=9 　　－－－－－－＞

Min Max Mean SD SE

-54.6403 54.0644 4.89358 13.5214 0.169018

Case: m=3

Min Max Mean SD SE

-41.8721 83.4967 4.85411 17.5032 0.21879

Case: M=0 with -sx=9,-sy=9 　　－－－－－－＞

Min Max Mean SD SE

-54.6403 56.99 4.87303 14.4517 0.180646