mrcImageSymmetryFind

mrcImageSymmetryFind is Eos's Command.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Optional	Output: mrcImage	NULL
-O	Optional	Output: ASCII(Symmetry Infomation)	stdout
-A	Optional	Output: mrcImage(Average)	NULL
-centreMode	Optional	centreMode	1
-t1	Optional	Threshold of CheckByAdd	1.8
-t2	Optional	Threshold in deciding the symmetry number	0.9
-m1	Optional	Mode of Check	3
-m2	Optional	Mode of Substruction	2
-dr	Optional	Delta r of outputfile.	1
-dtheta	Optional	Delta theta of outputfile. [degree]	1
-n	Optional	Check to the number	10
-nRange	Optional	Checkto the number: (nmin, nmax)	(2, 10)
-In	Optional	Input: (Image, Back)	(NULL, NULL)
-rangex	Optional	Input: (minx, maxx, delx)	(-3, 3, 1)
-rangey	Optional	Input: (miny, maxy, dely)	(-3, 3, 1)
-rangez	Optional	Input: (minz, maxz, delz)	(0, 0, 1)
-c	Optional	ConfigurationFile	NULL
-h	Optional	Help

-centreMode details

Value	Description
0	Centre is GC (gravity of centre)
1	Centre is Rotational Symmetry

-m1 details

Value	Description
1	Check by Add
2	Check by Correlation
4	Check by Fourier
8	Check by TTest
16	Check by SRP

-m2 details

Value	Description
0	No Subtraction
1	Mean Subtraction
2	Min Subtraction

-In format

Image, Back's format

mrcFile1
mrcFile2
.
.

Execution example

Input file image

Min Max Mean SD SE

0 (0, 0, 0) 65535 (14, 1, 0) 24950.9 31821.5 776.135

Example of options only essential

Output

 2 -> value: 1.000000 point: 33.333332
 3 -> value: 0.000000 point: 0.000000
 4 -> value: 3.000000 point: 100.000000
 5 -> value: 1.000000 point: 33.333332
 6 -> value: 1.000000 point: 33.333332
 7 -> value: 1.000000 point: 33.333332
 8 -> value: 0.000000 point: 0.000000
 9 -> value: 1.000000 point: 33.333332
10 -> value: 0.000000 point: 0.000000
Symmetry number 4.(Check by add, MinSubtraction)
 2 -> value: 0.754960 point: 25.118885
 3 -> value: 0.747752 point: 5.859963
 4 -> value: 0.782986 point: 100.000000
 5 -> value: 0.754746 point: 24.546839
 6 -> value: 0.757313 point: 31.407404
 7 -> value: 0.745559 point: 0.000000
 8 -> value: 0.776130 point: 81.683868
 9 -> value: 0.751637 point: 16.241667
10 -> value: 0.744289 point: -3.392937
Symmetry number 4.(Check by add, MinSubtraction)

-o 's file (By mrcImageMakeDump)

0 0 1 
1 0 0.748045 
2 0 0.757302 
3 0 0.777038 
4 0 0.751623 
5 0 0.751097 
6 0 0.751701 
7 0 0.750209 
8 0 0.744015 
9 0 0.775344 

...

350 0 0.745883 
351 0 0.775344 
352 0 0.744015 
353 0 0.750209 
354 0 0.751701 
355 0 0.751097 
356 0 0.751623 
357 0 0.777038 
358 0 0.757302 
359 0 0.748045 

-A 's image

Min Max Mean SD SE

0 (0, 0, 0) 65535 (14, 1, 0) 42883.4 31166 760.147