tiff2mrc
From EosPedia
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: tiff | NULL |
| -o | Essential | Output: mrcImage | NULL |
| -r | Optional | Resolution[A] | 2.5 |
| -t | Optional | x OptimalTime | 1.0 |
| -d | Optional | Directory Number | 0 |
| -I | Optional | Inverse(Black<->White) | 0 |
| -Signed | Optional | Original image is Signed or Not | Unsigned |
| -Offset | Optional | OffsetValue | 0.0 |
| -Max | Optional | MaxValue:2^Max | 16 |
| -Min | Optional | MinValue:2^Min: without 0 | 1 |
| -realMin | Optional | Real Min | 0.0 |
| -realMax | Optional | Real Max | 0.0 |
| -realMaxBit | Optional | RealMaxVauleBit | 14 |
| -sin | Optional | sin File from Zeiss | NULL |
| -c | Optional | ConfigurationFile | NULL |
| -S | Optional | ShrinkMode | 8 |
| -M | Optional | Mode1 | m=0: 0 m=1: 2 |
| -m | Optional | Mode2 | 0 |
| -h | Optional | Help |
-M details
| Value | Description |
|---|---|
| 0x0000000f | Direct or Log |
| 0x000000f0 | Which Color R: 00 G: 10 B: 20 |
-m details
| Value | Description |
|---|---|
| 0 | Direct |
| 1 | Log10(65535/data) |
Execution example
Input file image
Case: Options only essential
Output data by mrcImageInfo
Min: 0 (0, 0, 0) Max: 255 (49, 32, 0) Mean: 21.0538 SD: 47.6709 SE: 0.595886 Sum: 134744
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 255, 21.1)
Option -r
Case: r=5
Output data by mrcImageInfo
Min: 0 (0, 0, 0) Max: 255 (49, 32, 0) Mean: 21.0538 SD: 47.6709 SE: 0.595886 Sum: 134744
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 5.000, 5.000, 5.000) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 255, 21.1)
Option -I
Output data by mrcImageInfo
Min: 0 (49, 32, 0) Max: 255 (0, 0, 0) Mean: 233.946 SD: 47.6709 SE: 0.595886 Sum: 1.49726e+06
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 255, 234)
Option -Offset
Case: Offset=1
Output data by mrcImageInfo
Min: 0 (49, 32, 0) Max: 255 (36, 38, 0) Mean: 22.0138 SD: 47.5819 SE: 0.594774 Sum: 140888
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 255, 22)
Option -realMin, -realMax
Case: realMin=64, realMax=128
Output data by mrcImageInfo
Min: 64 (0, 0, 0) Max: 128 (49, 32, 0) Mean: 69.165 SD: 11.7927 SE: 0.147408 Sum: 442656
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 64, 128, 69.2)
Option -realMaxBit
Case: realMaxBit=1, realMin=64, realMax=128
Output data by mrcImageInfo
Min: 0 (44, 15, 0) Max: 192 (45, 17, 0) Mean: 72.44 SD: 39.3767 SE: 0.492209 Sum: 463616
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 192, 72.4)
Option -S
Case: S=2
Output data by mrcImageInfo
Min: 0 (0, 0, 0) Max: 245 (18, 19, 0) Mean: 20.9556 SD: 47.2215 SE: 1.18054 Sum: 33529
Output data by mrcInfo
N : ( 40, 40, 1) Mode : 0 mrcCharImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 5.000, 5.000, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 245, 21)
Option -m
Case: m=1
Output data by mrcImageInfo
Min: 0 (49, 32, 0) Max: 2.40654 (0, 0, 0) Mean: 1.97942 SD: 0.788953 SE: 0.00986191 Sum: 12668.3
Output data by mrcInfo
N : ( 80, 80, 1) Mode : 2 mrcFloatImage StartN : ( 0, 0, 0) M : ( 1, 1, 1) Length : ( 2.500, 2.500, 2.500) A,B,G : ( 90.00, 90.00, 90.00) C,R,S : ( 1, 2, 3) Min,Max,Mean : ( 0, 2.41, 1.98)
