Difference between revisions of "mrcImageSmoothing"
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Latest revision as of 06:08, 4 March 2015
mrcImageSmoothing is Eos's Command that performs Nonlinear smoothing mrcImage.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input名: mrcImage | NULL |
| -o | Optional | Output名: mrcImage | stdout(Standard output by default） |
| -sx | Optional | x of Kernel Size | 3 |
| -sy | Optional | y of Kernel Size | 3 |
| -sz | Optional | z of Kernel Size | 3 |
| -r | Optional | Radius of Kernel Size | 1 |
| -sigma | Optional | Sigma (For m=4) | 2.0 |
| -times | Optional | Repeat time | 1 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -M | Optional | Mode2 | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 1 | Median filter |
| 2 | Mean filter |
| 3 | Surface Fit filter |
| 4 | Lee-Sigma filter |
-M details
| Value | Description |
|---|---|
| 0 | Kernel is cube. : required argumnent: -sx, -sy, [-sz] |
| 1 | Kernel is sphere.(Only mode 1 supported) : required argumnent: -r |
Execution example
Example of Option -h
$ mrcImageSmoothing -h
Usage: /home/people/tacyas/Eos/bin/X86LINUX64/mrcImageSmoothing
Options:
[-i[nput] In (NULL )] :Essential :InputDataFile
[-o[utput] Out (NULL )] :Essential :OutputDataFile
[-sx sx (3 )] :Optional :x of Kernel Size
[-sy sy (3 )] :Optional :y of Kernel Size
[-sz sz (3 )] :Optional :z of Kernel Size
[-r r (1 )] :Optional :Radius of Kernel Size
[-sigma sigma (2.0 )] :Optional :Sigma for Lee-Sigma
[-m[ode] mode (0 )] :Optional :Mode
[-M[ode2] mode2 (0 )] :Optional :Mode
[-c[onfig] configFile (NULL )] :Optional :ConfigurationFile
>>> Mode <<<<
1: Median filter
2: Mean filter
3: Surface Fit filter
4: Lee-Sigma filter
>>> Mode2 <<<<
0: Kernel is cube. : required argumnent: -sx, -sy, [-sz]
1: Kernel is sphere.(Only mode 1 supported) : required argumnent: -r
Input file's image
 |
Min Max |
-65.0178 94.4699 |
Option -m, -M
Case: m=1
 |
Min Max |
-41.8721 65.9659 |
Case: M=0 with -sx=9,-sy=9 |
 |
Min Max |
-54.6403 54.0815 |
| Case: M=1 with -r=5 |
 |
Min Max |
-54.6403 55.7056 |
Case: m=2
 |
Min Max |
-41.8721 67.5276 |
Case: M=0 with -sx=9,-sy=9 |
 |
Min Max |
-54.6403 54.0644 |
Case: m=3
 |
Min Max |
-41.8721 83.4967 |
Case: M=0 with -sx=9,-sy=9 |
 |
Min Max |
-54.6403 56.99 |
