mrcImageNormalizing
From EosPedia
mrcImageNormalizing is Eos's Command that performs normalizing the value of image.
Contents
List of option
Main option
Option | Essential/Optional | Description | Default |
---|---|---|---|
-i | Essential | Input: mrcImage | NULL |
-o | Essential | Output: mrcImage | NULL |
-A | Optional | A | 1.0 |
-B | Optional | B | 0.0 |
-ContourMin | Optional | ContourMin | 0.0 |
-ContourMax | Optional | ContourMax | 1.0 |
-ContourSolvent | Optional | ContourSolvent | 0.0 |
-c | Optional | ConfigurationFile | NULL |
-m | Optional | Mode | 0 |
-h | Optional | Help |
-m details
Value | Description |
---|---|
0 | Double Exponential: Solvent and Object Fitting histgram to double exponentials as Solvent and Object |
1 | Min-Max: Background and Object data = A*(data-Min)/(Max-Min) + B |
2 | Contour data = A*(data-ContourMin)/(ContourMax-ContourMin) + B |
3 | Contour and Solvent if data < ContourSolvent, data = ContourSolvent. After this, calculate the below. |
4 | No Estimation data = A*data + B |
Execution example
Input file image
Min Max |
-18651.7 (10, 1, 0) 52942.7 (24, 39, 0) |
Example of options only essential
Min Max |
-0.00221962 (10, 1, 0) 0.00448009 (24, 39, 0) |
Option -A, -B
Case: A=1000, B=3
Min Max |
0.780381 (10, 1, 0) 7.48009 (24, 39, 0) |