clusterShow
From EosPedia
clusterShow is Eos's Command that creates dendrogram of Cluster Analysis about files.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Optional | Input: ASCII(Log)(All) | NULL |
| -i2 | Optional | Input2: ASCII(Log)(Node only) | NULL |
| -ib | Optional | BinaryLogFileName(Base) | NULL |
| -o | Optional | Output: ASCII(All) | stdout |
| -O | Optional | Output: ASCII(Node only) | stdout |
| -PS | Optional | Output: psfile(Need -I) | stdout |
| -I | Optional | FileList: ASCII | NULL |
| -OL | Optional | Output: ASCII(ClusterList) | stdout |
| -OT | Optional | Output: ASCII(TreeInfo) | NULL |
| -AL | Optional | Output: (OutAL, OutALRange, OutALSuffix) | (stdout, 0, avg) |
| -Last | Optional | Last: Num | 1 |
| -S | Optional | ArmScale: (Shulder, Arm) | (1, 1) |
| -P | Optional | Position: (X, Y) | (0, 0) |
| -Offset | Optional | Offset: Arm | 1 |
| -Log | Optional | Arm: Log Scale | |
| -Scaling | Optional | with Scaling | |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
Any one of -i, -i2 or -ib is essential.
-m details
| Value | Description |
|---|---|
| 0 |
Execution example
Input file
-i 's data
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 3.72121e+11
-i2 's data
CLUST MIN 1 0 1.04435e+11 0.83054 CLUST MIN 4 3 1.54653e+11 0.643245 CLUST MIN 2 0 1.77375e+11 0.751614 CLUST MIN 3 0 3.72121e+11 0.635649
-I 's data
Input-1VOM-N-2D.mrc Input-1VOM-N-Rot-2D.mrc Input-1VOM-N-Rot1-2D.mrc Input-1VOM-N-Rot2-2D.mrc Input-1VOM-N-Rot3-2D.mrc
filename
Outdata Outdata.00000001.00000000.00000002 Outdata.00000001.00000000.00000004 Outdata.00000003.00000002.00000003 Outdata.00000005.00000005.00000005
Output file
-i data
-o 's data
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 3.72121e+11
-O 's data
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 3.72121e+11
-i2 data
-o 's data
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 3.72121e+11
-ib data
-o 's data
1 0 5 5 1.04435e+11
2 0 5 5 1.90062e+11
2 1 5 5 1.27924e+11
3 0 5 5 2.70151e+11
3 1 5 5 2.24399e+11
3 2 5 5 2.00805e+11
4 0 5 5 2.70277e+11
4 1 5 5 2.23333e+11
4 2 5 5 2.13958e+11
4 3 5 5 1.54653e+11
1 0 1 0 1.77375e+11
2 0 1 0 2.92444e+11
2 1 1 0 2.00805e+11
3 0 1 0 2.95344e+11
3 1 1 0 2.13958e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
2 0 3 2 3.71482e+11
2 1 3 2 2.33577e+11
1 0 1 0 37.2121
-O 's data
1 0 5 5 1.04435e+11
3 2 1 0 1.54653e+11
1 0 3 2 1.77375e+11
1 0 1 0 37.2121
-i, -I data
-PS 's file
-OL 's data
Input-1VOM-N-2D.mrc 0 1.500000 267686019072.000000 Input-1VOM-N-Rot-2D.mrc 1 0.500000 267686019072.000000 Input-1VOM-N-Rot1-2D.mrc 2 -0.500000 194746007552.000000 Input-1VOM-N-Rot2-2D.mrc 3 -1.500000 217468010496.000000 Input-1VOM-N-Rot3-2D.mrc 4 -2.500000 217468010496.000000
-OT 's data
000003 0.000000 0.000000 1.000000 -1.500000 194746007552.000000 217468010496.000000 000004 217468010496.000000 -1.500000 0.500000 -0.500000 154652999680.000000 154652999680.000000 000002 194746007552.000000 1.000000 0.500000 -1.000000 72940003328.000000 177375002624.000000 000001 267686019072.000000 1.500000 0.500000 -0.500000 104434999296.000000 104434999296.000000
-AL 's data
Case: AL=(filename, 0, avg)
Input-1VOM-N-2D.mrc.avg 0 1.500000 267686019072.000000 0 0 Input-1VOM-N-Rot-2D.mrc.avg 1 0.500000 267686019072.000000 0 0 Input-1VOM-N-Rot1-2D.mrc.avg 2 -0.500000 194746007552.000000 0 0 Input-1VOM-N-Rot2-2D.mrc.avg 3 -1.500000 217468010496.000000 0 0 Input-1VOM-N-Rot3-2D.mrc.avg 4 -2.500000 217468010496.000000 0 0
Option -S, -P, -Log
Case: S=(9, 9), P=(0, 100), -Log
-PS 's file(part)
Case: S=(9, 9), P=(100, 200), -Log
-PS 's file(part)
Case: S=(6, 15), P=(0, 100), -Log
-PS 's file(part)
Option -Scaling
Case: -Scaling, S=(6, 30), P=(0, 100), -Log
-PS 's file(part)
Option -Offset
Case: Offset=10, -Scaling, S=(6, 30), P=(0, 100), -Log
-PS 's file(part)
