ctfZeroPoint
From EosPedia
ctfZeroPoint is Eos's Command.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -o | Optional | Output: ASCII | stdout |
| -RMax | Optional | max Spatial frequency[/A] | 0.1 |
| -dR | Optional | delta Spatial frequency[/A] | 0.0001 |
| -kV | Optional | Acceleration voltage[kV] | 200 |
| -Cs | Optional | Spherical aberration coefficient[mm] | 2.1 |
| -df | Optional | defocus: [A]:under(+) | 27000 |
| -dfMin | Optional | min defocus: [A] | 0 |
| -dfMax | Optional | max defocus: [A] | 200000 |
| -deltadf | Optional | delta defocus[A] | 2000 |
| -A | Optional | AmplitudeContrast/PhaseContrast | 0.05 |
| -N | Optional | Ordinal number of zero point | 1.0 |
| -Ain | Optional | Illumination Aperture[mrad] | 0.02 |
| -ctfMode | Optional | CTFMode | 0 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | One zero point |
| 1 | All zero points |
| 2 | All zero points along defocus |
CTFMode details
| Value | Description |
|---|---|
| 0 | Phase CTF |
| 1 | PhaseCTF + ratio*AmpCTF |
Execution example
Case: Options only essential
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 1 0.038443
Option -kV
Case: kV=100
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 1 0.031647
Option -Cs
Case: Cs=5.0
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 1 0.038453
Option -df
Case: df=20000
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 20000.000000 1 0.044674
Option -A
Case: A=0.1
[ZeroPointResult] AmpContrast 0.100000 Amount of Defocus [A] Number R [A] ......... 27000.000000 1 0.038443
Option -N
Case: N=2
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 2 0.054377
Option -ctfMode
Case: ctfMode=1
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 1 0.038136
Option -m
Case: m=1, N=2
[ZeroPointResult] AmpContrast 0.050000 Amount of Defocus [A] Number R [A] ......... 27000.000000 2 0.038443 0.054377
Case: m=2
Case: No other settings
[ZeroPointResult] AmpContrast 0.050000
Amount of Defocus [A] Number R [A] .........
0.000000 1 -1.000000
2000.000000 1 -1.000000
4000.000000 1 -1.000000
6000.000000 1 0.081838
8000.000000 1 0.070758
10000.000000 1 0.063241
12000.000000 1 0.057707
14000.000000 1 0.053414
16000.000000 1 0.049956
...
80000.000000 1 0.022330
82000.000000 1 0.022056
84000.000000 1 0.021792
86000.000000 1 0.021537
88000.000000 1 0.021291
90000.000000 1 0.021053
92000.000000 1 0.020823
94000.000000 1 0.020600
96000.000000 1 0.020384
98000.000000 1 0.020175
100000.000000 1 0.019972
...
190000.000000 1 0.014489
192000.000000 1 0.014414
194000.000000 1 0.014339
196000.000000 1 0.014266
198000.000000 1 0.014194
200000.000000 1 0.014122
Case: dfMin=8000, dfMax=100000, deltadf=4000
[ZeroPointResult] AmpContrast 0.050000
Amount of Defocus [A] Number R [A] .........
8000.000000 1 0.070758
12000.000000 1 0.057707
16000.000000 1 0.049956
20000.000000 1 0.044674
24000.000000 1 0.040777
28000.000000 1 0.037750
32000.000000 1 0.035311
36000.000000 1 0.033290
40000.000000 1 0.031581
44000.000000 1 0.030111
48000.000000 1 0.028829
52000.000000 1 0.027698
56000.000000 1 0.026690
60000.000000 1 0.025785
64000.000000 1 0.024966
68000.000000 1 0.024220
72000.000000 1 0.023538
76000.000000 1 0.022910
80000.000000 1 0.022330
84000.000000 1 0.021792
88000.000000 1 0.021291
92000.000000 1 0.020823
96000.000000 1 0.020384
100000.000000 1 0.019972
