mrcImage1dShiftAverageByAnnealing

mrcImage1dShiftAverageByAnnealing is Eos's Command.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input	NULL
-s	Essential	File to define position of signal	NULL
-o	Essential	Output	NULL
-r	Optional	Search range of shift.	Nx
-d	Optional	Spacing of molecule(Pixel).	1.0
-T	Optional	Initial temperature.	1.0
-iter	Optional	Number of iteration before reducing temperature.	1000
-eps	Optional	Temperature(T) reduced to (1-epsilon)T.	0.001
-tol	Optional	Number to identify convergence	1e-2
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-M	Optional	Mode2	0
-h	Optional	Help

-m details

Value	Description
0	All search
1	annealing method
2	mode 1 and refine by powel
3	mode 1 and refine by annealing

-M details

Value	Description
0	by amplitude
1	by power
2	by amplitude using only phase
3	by power using only phase
4	by amplitude using S/sqrt(S)
5	by power using only S/sqrt(S)

-i format

1DFile1
1DFile2
.
.

-s format

sigpos0  sigval0
sigpos1  sigval1
.
.

Execution example

Input file's data

Input-1VOM-1D.mrc
Input-1VOM-N-1D.mrc
Input-1VOM-N-Rot-1D.mrc

Input-1VOM-1D.mrc's image

Min Max Mean SD SE

9528.98 (1, 0, 0) 1.05166e+06 (41, 0, 0) 577032 281935 22288.9

Input-1VOM-N-1D.mrc's image

Min Max Mean SD SE

-24564.9 (1, 0, 0) 1.12206e+06 (40, 0, 0) 577190 290698 22981.7

Input-1VOM-N-Rot-1D.mrc's image

Min Max Mean SD SE

-27531.3 (2, 0, 0) 1.11446e+06 (37, 0, 0) 526414 325460 25729.9

-s data

0	1
1	1

Example of options only essential

Output

result  1 1 2 79  2.87532e+07 

-o image

Min Max Mean SD SE

-5553.38 (1, 0, 0) 3.11413e+06 (41, 0, 0) 1.68064e+06 876078 69260

Option -r

Case: r=78

Output

result  1 1 2 0  2.87481e+07 

-o image

Min Max Mean SD SE

-16386 (2, 0, 0) 3.09391e+06 (38, 0, 0) 1.68064e+06 880057 69574.6

Option -d

Case: d=3

Output

result  1 81 2 159  2.87532e+07 

-o image

Min Max Mean SD SE

-18002.3 (1, 1, 0) 3.11413e+06 (41, 0, 0) 1.68056e+06 876228 69271.9