mrcImage3DPad2

mrcImage3DPad2 is Eos's Command that is padding the mrcImage(3D) of particle or filament. Z size of the output file is different from mrcImage3DPad.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-r	Optional	Threshold radius of signal.(cf: -M)	Nx
-w	Optional	Width of slope. (For m=1.)	1
-v	Optional	Pad value	0
-Nx	Optional	Output's Nx	InputのNx
-Ny	Optional	Output's Ny	InputのNy
-Nz	Optional	Output's Nz	InputのNz
-Floating	Optional	Floating
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode of calculating pad value	0
-M	Optional	Mode of calculating -r	0
-h	Optional	Help

-m details

Value	Description
0	Out of threshold is avrage of threshold plain.(Default)
1	Mulplying cos function. Default: Out of threshold is avrage of threshold plain.

About pad value, -v is precedence.

-M details

Value	Description
0	For filaments. (R is calculated from its axis.)
1	For particles. (R is calculated from its center.)

Execution example

Input file image

xy-plane

yz-plane

Min Max Mean SD SE

-0.307724 (52, 10, 79) 1.52145 (47, 41, 47) 0.00295664 0.0916201 0.000132783

Example of options only essential

Output

Tailer: 0
Program Start
TailerNum 0
r: 34 

Output file's image

xy-plane

yz-plane

Min Max Mean SD SE

-0.307724 (52, 10, 79) 1.52145 (47, 41, 47) 0.00295664 0.0916201 0.000132783

Image does not change almost by default.

Option -Nx, -Ny, -Nz

Case: Nx=50, Ny=50, Nz=75

Output

Tailer: 0
Program Start
TailerNum 0
r: 34 

Output file's image

xy-plane

yz-plane

Min Max Mean SD SE

-0.295151 (23, 12, 71) 1.52145 (38, 32, 47) 0.0057768 0.106019 0.000212039

Option -r

Case: r=20

Output

Tailer: 0
Program Start
TailerNum 0
r: 20 

Output file's image

xy-plane

yz-plane

Min Max Mean SD SE

-0.295151 (32, 21, 71) 1.52145 (47, 41, 47) 0.00236564 0.0675752 9.79351e-05