mrcImageInfo
From EosPedia
mrcImageInfo is Eos's Command that displays image information of mrcImage.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -o | Optional | Output: ASCII | stdout(The standard output by default） |
| -I | Optional | When it set, it outputs the general statistics of image. |
|
| -X | Optional | Output: x=X (vaule): ASCII | 0.0 |
| -Y | Optional | Output: y=Y (vaule): ASCII | 0.0 |
| -x | Optional | Output: x Projection: ASCII | |
| -y | Optional | Output: y Projection: ASCII | |
| -H | Optional | Histgram (Normalize): Number | 256 |
| -H2 | Optional | Histgram2 (Normalize): Width | 1 |
| -H3 | Optional | Histgram3 (Count): Number | 256 |
| -H4 | Optional | Histgram4 (Count): Width | 1 |
| -H5 | Optional | Histgram5 (Count: -Low, need -High): Number | 1 |
| -H6 | Optional | Histgram6 (Count: need -Low, -High): Width | 1 |
| -Low | Optional | Threshold (start point of output) | 1 |
| -High | Optional | Threshold (end point of output) | 1 |
| -rmax | Optional | rmax [A] | 250 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | mean of all density |
| 1 | mean of sphere surface density at rmax |
| 2 | mean of cylinder surface density at rmax |
| 3 | mean of edge pixels |
| 4 | mean of Centre: not implemented |
| 5 | mean of Sparse: not implemented |
| 6 | mean of 2DEdge: not implemented |
| 7 | RMS of all pixels |
Execution example
Input file's image
Using for m=1, m=2
-mrcImageInfo.png)
Example of options only essential
if no option, no output.
オプション -I
Min: 0 (41, 10, 0) Min value (its coordinate) Max: 255 (42, 36, 0) Max value (its coordinate) Mean: 111.211 Mean SD: 32.7239 Standard deviation SE: 0.409049 Standard error Sum: 711751
Option -X
Case: X=40
0 117
1 118
2 128
3 100
4 133
5 70
...
74 118
75 73
76 83
77 97
78 79
79 96
Option -Y
Case: Y=40
0 105
1 130
2 76
3 98
4 113
5 86
...
74 131
75 111
76 97
77 79
78 71
79 128
Option -x
0 230
1 2
2 23
3 157
4 107
5 108
...
74 197
75 57
76 118
77 157
78 49
79 102
Option -y
0 66
1 116
2 223
3 135
4 185
5 231
...
74 154
75 158
76 177
77 189
78 244
79 5
Option -H
Case: H=256
0 0.00990099 | *
1 0 |*
2 0 |*
3 0 |*
4 0 |*
5 0 |*
...
62 0.217822 | *
63 0.326733 | *
64 0.306931 | *
65 0.267327 | *
66 0.326733 | *
67 0.336634 | *
68 0.287129 | *
69 0.356436 | *
70 0.356436 | *
71 0.386139 | *
72 0.39604 | *
73 0.386139 | *
74 0.415842 | *
75 0.386139 | *
76 0.465347 | *
77 0.475248 | *
78 0.475248 | *
79 0.584158 | *
80 0.50495 | *
...
116 0.920792 | *
117 0.920792 | *
118 0.683168 | *
119 1 | *
120 0.782178 | *
121 0.712871 | *
122 0.623762 | *
123 0.594059 | *
124 0.653465 | *
125 0.70297 | *
126 0.70297 | *
127 0.653465 | *
128 0.613861 | *
129 0.633663 | *
130 0.485149 | *
131 0.564356 | *
132 0.514851 | *
133 0.475248 | *
134 0.405941 | *
...
250 0 |*
251 0 |*
252 0 |*
253 0 |*
254 0 |*
255 0.00990099 | *
Case: H=16
0 0.00213068 | *
17 0.00497159 | *
34 0.0326705 | *
51 0.139915 | *
68 0.40625 | *
85 0.796165 | *
102 1 | *
119 0.922585 | *
136 0.585227 | *
153 0.319602 | *
170 0.176847 | *
187 0.0852273 | *
204 0.0539773 | *
221 0.0106534 | *
238 0.0078125 | *
255 0.00142045 | *
Option -H2
Case: H2=2
0 0.00540541 | *
2 0 |*
4 0 |*
6 0 |*
8 0.0108108 | *
10 0 |*
...
62 0.259459 | *
64 0.345946 | *
66 0.324324 | *
68 0.340541 | *
70 0.389189 | *
72 0.427027 | *
74 0.437838 | *
76 0.464865 | *
78 0.518919 | *
80 0.594595 | *
...
116 0.989189 | *
118 0.875676 | *
120 0.972973 | *
122 0.72973 | *
124 0.681081 | *
126 0.767568 | *
128 0.691892 | *
130 0.610811 | *
132 0.589189 | *
134 0.481081 | *
...
244 0.00540541 | *
246 0.0108108 | *
248 0.00540541 | *
250 0 |*
252 0 |*
254 0 |*
Option -H3
Case: H3=256
0 1
1 0
2 0
3 0
4 0
5 0
...
125 71
126 71
127 66
128 62
129 64
130 49
131 57
...
250 0
251 0
252 0
253 0
254 0
255 1
Option -H4
Case: H4=1
0 1
1 0
2 0
3 0
4 0
5 0
...
125 71
126 71
127 66
128 62
129 64
130 49
131 57
...
250 0
251 0
252 0
253 0
254 0
255 1
Option -H5
Case: H5=16
1 1 | *
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
1 0 |*
Case: H5=16, Low=0, High=255
0 0.00213068 | *
17 0.00497159 | *
34 0.0326705 | *
51 0.139915 | *
68 0.40625 | *
85 0.796165 | *
102 1 | *
119 0.922585 | *
136 0.585227 | *
153 0.319602 | *
170 0.176847 | *
187 0.0852273 | *
204 0.0539773 | *
221 0.0106534 | *
238 0.0078125 | *
255 0.00142045 | *
Option -H6
Case: H6=16
1 1
Case: H6=16, Low=0, High=255
0 0.00213068
16 0.00497159
32 0.0326705
48 0.139915
64 0.40625
80 0.796165
96 1
112 0.922585
128 0.585227
144 0.319602
160 0.176847
176 0.0852273
192 0.0539773
208 0.0106534
224 0.0078125
240 0.00142045
Option -m
Case: m=1, I
Case: No other settings
Mean: 0.616809 SD: 0.673385 SE: 0.0013199
Case: rmax=50
Mean: 1.1812 SD: 0.106769 SE: 0.000209277
Case: m=2, I
Case: No other settings
Mean: -1.1766e-05 SD: 0.000598326 SE: 2.23951e-06
Case: rmax=50
Mean: 1.01668 SD: 0.477893 SE: 0.00178873
Case: m=3, I
Mean: 102.924 SD: 25.5864 SE: 1.43935
Case: m=7, I
RMS: 115.926
