mrcImageOrientationSearch

mrcImageOrientationSearch is Eos's Command.

List of option

Main option

Option	Essential/Optional	Description	Default
-I1	Essential	Input1: ASCII(File List)	NULL
-I2	Essential	Input2: ASCII(File List)	NULL
-o	Essential	Output: In development	NULL
-T	Optional	Threshold	0
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0	There is one common line position in input file (using Test)
1	There is correlation file name in input file (common line position is determined Max correlation)
2	There is correlation file name in input file (common line position is determined Threshold), -T

-i1 format

m=0

XXXX filename1 filename2 commonlineposition1 commonlineposition2 commonlinepositionMode
    .           .                .                        .                                  .                                     .
    .           .                .                        .                                  .                                     .
    .           .                .                        .                                  .                                     .
    .           .                .                        .                                  .                                     .

First data XXXX is not used.
commonlinepositionMode: 1 or z-rotation

m=1, 2

correlationfilename filename1 filename2
            .                        .               .
            .                        .               .
            .                        .               .
            .                        .               .

-i2 format

filename 
      .
      .
      .
      .

Execution example

-i1 data

1	/Eos/img/Input0.mrc /Eos/img/Input1.mrc      275.77      152.88 1
2	/Eos/img/Input0.mrc /Eos/img/Input2.mrc      355.67      239.91 1
3	/Eos/img/Input0.mrc /Eos/img/Input3.mrc       80.08      158.58 1
4	/Eos/img/Input0.mrc /Eos/img/Input4.mrc        0.00        0.00 z-rotation
5	/Eos/img/Input1.mrc /Eos/img/Input2.mrc      240.00      300.00 1
6	/Eos/img/Input1.mrc /Eos/img/Input3.mrc      168.02      311.98 1
7	/Eos/img/Input1.mrc /Eos/img/Input4.mrc      332.88       95.77 1
8	/Eos/img/Input2.mrc /Eos/img/Input3.mrc      270.12      242.50 1
9	/Eos/img/Input2.mrc /Eos/img/Input4.mrc       59.91      175.67 1
10	/Eos/img/Input3.mrc /Eos/img/Input4.mrc      338.58      260.08 1

-i2 data

/Eos/img/Input0.mrc
/Eos/img/Input1.mrc
/Eos/img/Input2.mrc
/Eos/img/Input3.mrc
/Eos/img/Input4.mrc

Example of options only essential

Output

angle[0] = 4.813094 >> cosine = 0.100535 sine = -0.994933
angle[1] = 2.668259 >> cosine = -0.890054 sine = 0.455856
angle[2] = 6.207613 >> cosine = 0.997146 sine = -0.075501
angle[3] = 4.187219 >> cosine = -0.501360 sine = -0.865239
angle[4] = 4.188790 >> cosine = -0.500000 sine = -0.866025
angle[5] = 5.235988 >> cosine = 0.500000 sine = -0.866025
cosineXr1 = 0.349082 cosineXr2 = -0.224265 
ratio = -0.961585 
Xrotation1 = 1.214205 Xrotation2 = 1.796985

filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000)
filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 69.568827)
filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 102.959645)

filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000)
filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 290.431173)
filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 257.040355)