mrcImagePad

mrcImagePad is Eos's Command that performs padding.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-W	Optional	Width[pixel]	0
-H	Optional	Height[pixel]	0
-V	Optional	Padding Value(float on avgrage density)	0.0
-EV	Optional	Expected Value for Background/td>	0.0
-AW	Optional	Averaging Window Size [A]	2000.0
-AWMin	Optional	Averaging Window Size Min[pixel]	20
-AWMax	Optional	Averaging Window Size Max[pixel]	22
-Tilt	Optional	TiltImage: (TiltAxisAngle, TiltAngle)	0,0
-m	Optional	Mode	0
-h	Optional	Help	0

-m details

Value	Description
0	Pad average density(Image Center)
1	Pad average density of x=0 and x=MAX(x)(Image Center)
2	Pad dynamic average density of x=0 and x=MAX(x)(Image Center)
3	Pad average density of x=0,MAX(x) and y=0,MAX(y), (Image Center)
4	Pad average density of bottom left
5	Pad value (Image Center)
6	Pad value of bottom left
7	Pad value estimated from outside circle
8	Pad value estimated from outside ring: -AWMin -AMax
9	Pad value is Value
10	Periphery Masking Using ExpectedValue
11	Normalized Padding using (I(x,y)-avg(bg))/avg(bg))
12	Normalized Padding using (I(x,y)-avg(I))/sqrt(var(I)))
13	Normalized Padding using (I(x,y)-avg(bg))/sqrt(var(bg)))
14	Normalized Padding using (I(x,y)-avg(bg))/(avg(I)-avg(bg))
15	Tilted Image Circle Average: Need two values of TiltAxisAngle TiltAngle

Execution example

------Option -m------

Case: m=0
Input
	Min Max Mean SD SE	0.164437 0.856332 0.331084 0.0903754 0.00177241	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	-0.166647 0.525248 4.04907e-05 0.0504441 0.000630551
Case: m=1
Input
	Min Max Mean SD SE	0.164437 0.856332 0.331084 0.0903754 0.00177241	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	-0.142948 0.548947 0.00744655 0.0516391 0.000645489
Case: m=2
Input
	Min Max Mean SD SE	0.164437 0.856332 0.331084 0.0903754 0.00177241	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	-0.137842 0.550977 0.0074793 0.0513355 0.000641694
			Case: -AW 100 　　－－－－－－＞		Min Max Mean SD SE	-0.177415 0.563255 0.00805666 0.0522009 0.000652512
Case: m=3
Input
	Min Max Mean SD SE	0.164437 0.856332 0.331084 0.0903754 0.00177241	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	-0.151435 0.54046 0.00479425 0.0509428 0.000636785
Case: m=4
Input
	Min Max Mean SD SE	-65.0178 94.4699 4.85274 20.4635 0.255794	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-69.8706 89.6171 -5.28336e-08 16.3708 0.163708
Case: m=5
Input
	Min Max Mean SD SE	-0.151435 0.54046 0.00479425 0.0509428 0.000636785	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	0 0.856332 0.103504 0.161597 0.00201996
			Case: -V 1 　　－－－－－－＞		Min Max Mean SD SE	0.164437 1 0.791004 0.314068 0.00392585
Case: m=6
Input
	Min Max Mean SD SE	-0.151435 0.54046 0.00479425 0.0509428 0.000636785	Output Case: -W 80,-H 80 　　－－－－－－＞		Min Max Mean SD SE	0 0.856332 0.101998 0.159322 0.00199153
			Case: -V 1 　　－－－－－－＞		Min Max Mean SD SE	0.164437 1 0.789498 0.316196 0.00395246
Case: m=7
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output 　　－－－－－－＞		Min Max Mean SD SE	-52.9982 101.923 5.5193 18.1424 0.22678
Case: m=8
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 -AWMin 20,-AWMax 30 　　－－－－－－＞		Min Max Mean SD SE	-45.1007 99.7399 2.77838 10.7886 0.107886
Case: m=9
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-53.0655 101.855 3.4893 15.8828 0.158828
Case: m=10
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-1.31576 35.2476 0.439553 2.76567 0.0276567
			Case: -V 1 　　－－－－－－＞		Min Max Mean SD SE	0 64.5929 1.43143 7.79087 0.0779087
Case: m=11
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-62.2413 116.548 3.3869 18.2569 0.182569
Case: m=12
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-2.98831 4.92302 -2.51009e-10 0.8 0.008
Case: m=13
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-3.46173 6.48217 0.188372 1.01541 0.0101541
Case: m=14
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 　　－－－－－－＞		Min Max Mean SD SE	-55.6403 104.188 3.0277 16.3206 0.163206
Case: m=15
Input
	Min Max Mean SD SE	-53.0655 101.855 5.45203 19.5821 0.244776	Output Case: -W 100,-H 100 -Tilt 30,30 　　－－－－－－＞		Min Max Mean SD SE	-48.0036 101.882 3.51487 14.2277 0.142277
			Case: -W 100,-H 100 -Tilt 120,120 　　－－－－－－＞		Min Max Mean SD SE	-47.3067 101.973 3.4676 12.6731 0.126731