mrcImageROI

mrcImageROI is Eos's Command that extracts the ROI from mrcImage file.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage(2D)	NULL
-o	Essential	Output: mrcImage(2D ROI)	NULL
-r	Optional	Rectangle ROI (blx, bly, brx, bry, trx, try, tlx, tly)	(0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0)
-x	Optional	Width before expansion	1.0(Default is set by -r)
-y	Optional	Height before expansion	1.0(Default is set by -r)
-a	Optional	This value [degree] is added to angle of current source image.	0.0
-W	Optional	Width after expansion[Pixel]	1.0
-H	Optional	Height after expansion[Pixel]	1.0
-Shift	Optional	ROI ARea Shift [Pixel](ShiftX, ShiftY)	(0.0, 0.0)
-truePitch	Optional	truePitch [A]	430.0
-dY	Optional	Number of turePitch	0.0
-Ly	Optional	Header Length y [A/Pixel]	5.0
-S	Optional	When inputfile is shrinked	1
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Setting of Interpolation method.

Value	Description
0	Nearest neighbor method
1	Bi-linear interpolation method
2	Cubic convolution method
3	Polynomial interpolation method

Execution example

------Input file's image------

Min Max Mean SD SE

0 255 82.357 119.241 1.49051

Using image Added the Noise 　　－－－－－－＞

Min Max Mean SD SE

0 255 96.8606 123.396 1.54245

------Example of options only essential------

Min Max Mean SD SE

0 255 96.8606 123.396 1.54245

* There is no change in particular.

------Option -r------

Case: -r 10 10 70 20 70 70 10 60

Min Max Mean SD SE

0 255 123.636 126.999 2.2585

------Option -x, -y------

Case: x=100, y=100
	Min Max Mean SD SE	0 255 82.5123 118.972 1.18972
Case: x=50, y=50
	Min Max Mean SD SE	0 255 125.118 127.03 2.5406

------Option -a------

Case: a=30
	Min Max Mean SD SE	0 255 102.184 124.572 1.55715

------Option -W, -H------

Case: W=100, H=100
	Min Max Mean SD SE	0 255 95.808 123.128 1.23128
Case: W=50, H=50
	Min Max Mean SD SE	0 255 95.5624 123.048 2.46095

------Option -Shift------

Case: Shift=10
	Min Max Mean SD SE	0 255 96.8606 124.572 1.55715
Case: Shift=30
	Min Max Mean SD SE	0 255 96.8606 123.396 1.54245

------Option -S------

Case: S=2
	Min Max Mean SD SE	0 255 97.5262 123.5572 0.777089
Case: S=3
	Min Max Mean SD SE	0 255 97.7599 123.612 0.519379

------Option -m------

The image processed -r was used as input file. (Since the change is easy to find.)

Case: m=0
	Min Max Mean SD SE	0 255 96.8606 123.396 1.54245
Case: m=1
	Min Max Mean SD SE	0 255 123.29 103.921 1.84808
Case: m=2
	Min Max Mean SD SE	-89.3528 354.475 123.427 120.789 2.14806
Case: m=3
	Min Max Mean SD SE	-44414.5 632802 133351 142680 2537.36