mrcImageROIs

mrcImageROIs is Eos's Command that cuts out multiple ROIs required.

Algorithm

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-I	Essential	Input:ASCII(ROI Information)	NULL
-o	Optional	Output: Montage file	stdout(Standard output by default）
-S	Optional	Input: when the shrink ratio between Input file and image with ROI Information is different.	NULL (No Shrink)
-w	Optional	Input: Width of all	0.0 (Depending to ROI Information)
-h	Optional	Input: Height of all	0.0 (Depending to ROI Information)
-m	Optional	Interpolation mode	0
-M	Optional	Output file's format	2

-m details

Setting of Interpolation method.

Value	Description
0	Nearest neighbor method
1	Bi-linear interpolation method
2	Cubic convolution method
3	Polynomial interpolation method

-M details

Setting format of output file.

Value	Description
0	Char
1	Short
2	Float

ROI Information file's format

OutputFileName　Shape　Parameter

Rectangle (4 corners)

OutFileName Rect   blx bly brx bry trx try tlx tly

Rectangle (Center and Size)

OutFileName Rect2  centerx centery width height

Center and Radius

OutFileName Circle centerx centery radius

Execution example

------Input file's image------

Min

Max
Mean
SD

SE

0

255
82.357
119.241

1.49051

Using image Added the Noise
　　－－－－－－＞

Min

Max
Mean
SD

SE

0

255
95.3804
123.024

1.51882

------Infomation file's data------

Format pattern1: OutFileName Rect blx bly brx bry trx try tlx tly

*Setting as coordinates of rectangle

inputnoise-0000.roi Rect 6 6 26 6 26 26 6 26
inputnoise-0001.roi Rect 20 6 40 6 40 26 20 26
inputnoise-0002.roi Rect 40 6 60 6 60 26 40 26
inputnoise-0003.roi Rect 54 6 74 6 74 26 54 26
inputnoise-0004.roi Rect 6 20 26 20 26 40 6 40
inputnoise-0005.roi Rect 20 20 40 20 40 40 20 40
inputnoise-0006.roi Rect 40 20 60 20 60 40 40 40
inputnoise-0007.roi Rect 54 20 74 20 74 40 54 40
inputnoise-0008.roi Rect 6 40 26 40 26 60 6 60
inputnoise-0009.roi Rect 20 40 40 40 40 60 20 60
inputnoise-0010.roi Rect 40 40 60 40 60 60 40 60
inputnoise-0011.roi Rect 54 40 74 40 74 60 54 60
inputnoise-0012.roi Rect 6 54 26 54 26 74 6 74
inputnoise-0013.roi Rect 20 54 40 54 40 74 20 74
inputnoise-0014.roi Rect 40 54 60 54 60 74 40 74
inputnoise-0015.roi Rect 54 54 74 54 74 74 54 74