mrcImageSuperResolution

mrcImageSuperResolution is Eos's Command.

List of option

Main option

Option	Essential/Optional	Description	Default
-I	Essential	Input: Original	NULL
-i	Essential	Input: Previous	NULL
-ic	Optional	Input: CounterforWeight FourierSpace	NULL
-o	Essential	Output: Next	NULL
-t	Optional	Number of time: Iteration(Real Space)	1
-fromp1	Optional	First value near origin of coordinates (x00[pixel], y00[pixel], z00[pixel])	(0, 0, 0)
-top1	Optional	target value ( x01[pixel], y01[pixel], z01[pixel])	(2, 2, 2)
-fromp2	Optional	First value far from origin of coordinates (x10[pixel], y10[pixel], z10[pixel])	(0, 0, 0)
-top2	Optional	target value (x11[pixel], y11[pixel], z11[pixel])	(0, 0, 0)
-LabelingMode	Optional	LabelingMode	0
-max	Optional	Density Max value: Support Constraint()	800
-min	Optional	Density Min value: Support Constraint()	200
-sh	Optional	Shape	0
-hvp	Optional	Half value point(/[A])	0.0
-Inverse	Optional	Inverse
-nM	Optional	Number of Molecule	1
-M	Optional	MolecularWeight	80000
-D	Optional	Density: (g/cm3)	1.35
-counter	Optional	Counter(Fourier Space)	3.0
-dDensity	Optional	Delta (Convergence)	100.0
-dArea	Optional	Area(Convergence)	100.0
-sub	Optional	Subtraction(Convergence)	0.2
-ratio	Optional	Ratio(Convergence)	0.3
-tmax	Optional	Time Max(Convergence)	1000
-wd	Optional	WeightDelta(Fourier Space)	0.1
-wm	Optional	WeightMax(Fourier Space)	2
-Subtraction	Optional	Subtraction(Real Space)
-c	Optional	ConfigurationFile	NULL
-m	Essential	RealSpaceCalculating	0
-h	Optional	Help

-Inverse
If high density means the location of protein, -Inverse is required for volume calculation.
-wm and -wd
weight = counter / (weightmax + counter)
weightmax -> 0 (weightdelt by weightdelta) 
-Subtraction
Real Space Constraint for desolving edge problem

-m details

Value	Description	513	514	515	673	672	675	736	737	742	517	518	519	534	257	258	259
+1	AreaAndLocation	◯		◯	◯		◯		◯		◯		◯		◯		◯
+2	Density		◯	◯			◯			◯		◯	◯	◯		◯	◯
+4	Convergence(Option)									◯	◯	◯	◯	◯
+16	NonnegativeMode(before RealSpaceConstraint)													◯
+32	Binarization(before RealSpaceConstraint)				◯	◯	◯	◯	◯	◯
+64	Labeling							◯	◯	◯
+128	SixOrientation				◯	◯	◯	◯	◯	◯
+256	LowpassfilterMode(-hvp is required)														◯	◯	◯
+512	CounterMode(-ic is required)	◯	◯	◯	◯	◯	◯	◯	◯	◯	◯	◯	◯	◯

They are used in combination.

-LabelinMode details

Value	Description
0	TheLargestLabelingSearch
1	SomeVolumeLabelingSearch

-sh details

Value	Description
0	Rectangle
1	Globe

Execution example

Input file's image

-I file's image

Min Max Mean SD SE

0 (0, 0, 0) 49749.7 (27, 28, 0) 7212.9 8827.15 110.339

-i file's image

Min Max Mean SD SE

-18651.7 (10, 1, 0) 52942.7 (24, 39, 0) 7214.87 10067.6 125.845

-ic file's image (For m=+512)

by mrcFFTExpression(m=1)

Min Max Mean SD SE

18.4637 (75, 36, 0) 577032 (0, 0, 0) 3573.53 13475.7 168.446

Option -m

Case: m=257, hvp=0.6

Min Max Mean SD SE

-8991.5 (62, 67, 0) 45836.1 (18, 41, 0) 7214.87 9093.88 113.673

Case: m=258, hvp=0.6

Min Max Mean SD SE

-8601.65 (53, 3, 0) 53186.7 (24, 39, 0) 7214.87 9760.69 122.009

Case: m=259, hvp=0.6

Case: No other settings

Min Max Mean SD SE

-8999.82 (62, 67, 0) 45839 (18, 41, 0) 7214.87 9093.6 113.67

Case: t=100

Min Max Mean SD SE

-7536.4 (62, 67, 0) 45966.4 (18, 41, 0) 7214.87 9105.49 113.819

Case: top1=(20, 20, 0), tpo2=(60, 60, 0)

Min Max Mean SD SE

-15758.5 (56, 22, 0) 52052.5 (24, 39, 0) 7214.87 9421.67 117.771

Case: m=513

Case: No other settings

Min Max Mean SD SE

-19348.5 (10, 1, 0) 53392.6 (24, 39, 0) 7214.87 10054.2 125.678

Case: counter=3000

Min Max Mean SD SE

-22031.6 (0, 0, 0) 48805.4 (24, 39, 0) 7214.87 9538.88 119.236

In the following, Setting atcounter=3000

Case: m=514

Min Max Mean SD SE

-15917 (10, 1, 0) 52659.8 (24, 39, 0) 7214.87 9915.95 123.949

Case: m=515

Min Max Mean SD SE

-20273.1 (0, 0, 0) 48844.2 (24, 39, 0) 7214.87 9539.42 119.243

Case: m=736

Case: No other settings

Min Max Mean SD SE

-15814.1 (10, 1, 0) 52224.5 (24, 39, 0) 7214.87 9877.61 123.47

Case: LabelingMode=1

Min Max Mean SD SE

-19306.2 (10, 1, 0) 52834.2 (24, 39, 0) 7214.87 9993.85 124.923