mrcImageUnexpectedMassFromPDB
mrcImageUnexpectedMassFromPDB is Eos's Command.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: mrcImage | NULL |
| -p | Essential | Input: PDB | NULL |
| -o | Essential | Output: mrcImage | NULL |
| -T | Essential | ThresHold | 0.0 |
| -D | Essential | AssignedData | 0.0 |
| -M | Optional | AtomMode | 1 |
| -r | Optional | Radius (for M=2, 3) | 3.4 |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-m details
| Value | Description |
|---|---|
| 0 | Origin is BottomLeft. |
| 1 | Origin is Center.(Helix) |
| 2 | Origin is Center.(3D Single) |
| 3 | Origin is shown by StartN. |
| 16 | MaxIsProtein : Default: MinIsProtein |
-M details
| Value | Description |
|---|---|
| 0 | Nearest Voxel -> Data |
| 1 | Nearest and 6-linked voxel -> Data |
| 2 | Specified spheres(Outside) -> Data |
| 3 | Inside of Specified spheres -> Data |
| Outside of Specified spheres -> Data |
Execution example
Input file's image
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
 |
Gravity Centre(CA) Atom far from Centre(CA) |
6.727136e+01 3.631518e+01 -2.983928e+01 5.314867e+01 |
Example of options only essential
Case: T=3000 ,D=3000
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Option -M
Case: M=0
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: M=2
Case: No other settings
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: r=10
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: M=3
Case: No other settings
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: r=20
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Option -m
Case: m=1
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: m=2
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: m=3
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
Case: m=16
|
|
Min Max |
0 (0, 0, 0) 21001.7 (30, 26, 27) |
