mrcImagepdbFileReduce

mrcImagepdbFileReduce is Eos's Command that subtracts expected density from PDB.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: mrcImage	NULL
-p	Essential	Input: PDB	NULL
-o	Essential	Output: mrcImage	NULL
-t	Essential	Threshold	0
-r	Optional	Radius of Atom	1
-v	Optional	[PDB]] file's PixelVaule	0
-IT	Optional	Threshold for interface recognition	0
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0

Execution example

Input file's image

-i file's image

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 21001.7 (30, 26, 27) 213.171 1416 2.67599

-p file's Image

Gravity Centre(CA) Atom far from Centre(CA) Atom far from Centre(CA, Axis)

6.727136e+01 3.631518e+01 -2.983928e+01 5.314867e+01 40.92 41.49 48.47

Case: Options only essential

Case: t=10000

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 21001.7 (30, 26, 27) 102.239 1187.54 2.24424

In the following, Setting att=10000

Option -r

Case: r=70

Case: No other settings

Output

3A 
4A 
5A 
6A 
7A 
8A 
9A 
10A 
11A 
12A 

...

1691A 
1693A 
1695A 
1696A 
1697A 
1698A 
1699A 
1700A 
1703A 
1704A 

-o 's image

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 20982.9 (33, 29, 34) 72.6667 1003.8 1.897

Case: ITh=20000

Output

6A 
7A 
8A 
9A 
10A 
14A 
20A 
22A 
23A 
24A 
1231A 
1242A 
1344A 
1360A 
1361A 
1540A 
1553A 
1616A 
1663A 

-o 's image

xy-plane

yz-plane

Min Max Mean SD SE

0 (0, 0, 0) 20982.9 (33, 29, 34) 72.6667 1003.8 1.897

Option -v

Case: v=10000

xy-plane

yz-plane

Min Max Mean SD SE

10000 (0, 0, 0) 21001.7 (30, 26, 27) 10026.6 362.839 0.685702