View source for mrcImageCTFCompensationForTiltImage

'''mrcImageCTFCompensationForTiltImage''' is [[Eos]]'s [[Command]] that performs [[CTF Correction]] for [[Tilt image]].


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-I</td> 
				<td>Essential</td> 
				<td>ROI information: [[ASCII]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[mrcImage]]([[CTF]])</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-cut</td> 
				<td>Optional</td> 
				<td>Range with no compensation (The number of pixels from the center)</td> 
				<td>6</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td></td> 
			</tr> 
		</table> 

===-I  format===
<div>cf [[mrcImageROIs]] about ROI information's format.</div>


== Execution example ==
===Input file's data===
====-i  image====
	<table> 
		<tr> 
			<td>[[File:Input-mrcImageCTFCompensationForTiltImage.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				255 (49, 32, 0)<br> 
				21.0538<br> 
				47.6709<br> 
				0.595886<br></p> 
			</td> 
		</tr> 
	</table> 


====-I  data====
<pre>
/Eos/img/ROISet0/inputnoise-0000.roi Rect 6 6 26 6 26 26 6 26
/Eos/img/ROISet0/inputnoise-0001.roi Rect 20 6 40 6 40 26 20 26
/Eos/img/ROISet0/inputnoise-0002.roi Rect 40 6 60 6 60 26 40 26
/Eos/img/ROISet0/inputnoise-0003.roi Rect 54 6 74 6 74 26 54 26
/Eos/img/ROISet0/inputnoise-0004.roi Rect 6 20 26 20 26 40 6 40
/Eos/img/ROISet0/inputnoise-0005.roi Rect 20 20 40 20 40 40 20 40
/Eos/img/ROISet0/inputnoise-0006.roi Rect 40 20 60 20 60 40 40 40
/Eos/img/ROISet0/inputnoise-0007.roi Rect 54 20 74 20 74 40 54 40
/Eos/img/ROISet0/inputnoise-0008.roi Rect 6 40 26 40 26 60 6 60
/Eos/img/ROISet0/inputnoise-0009.roi Rect 20 40 40 40 40 60 20 60
/Eos/img/ROISet0/inputnoise-0010.roi Rect 40 40 60 40 60 60 40 60
/Eos/img/ROISet0/inputnoise-0011.roi Rect 54 40 74 40 74 60 54 60
/Eos/img/ROISet0/inputnoise-0012.roi Rect 6 54 26 54 26 74 6 74
/Eos/img/ROISet0/inputnoise-0013.roi Rect 20 54 40 54 40 74 20 74
/Eos/img/ROISet0/inputnoise-0014.roi Rect 40 54 60 54 60 74 40 74
/Eos/img/ROISet0/inputnoise-0015.roi Rect 54 54 74 54 74 74 54 74

</pre>

Using ROI files: [[Media:Input-ROISet0.zip | Input file]]


=== Example of options only essential ===
	<table> 
		<tr> 
			<td>[[File:Outdata-mrcImageCTFCompensationForTiltImage.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">1 (7, 7, 0)<br> 
				255 (22, 7, 0)<br> 
				155.874<br> 
				73.4908<br> 
				0.918635<br></p> 
			</td> 
		</tr> 
	</table> 


=== Option -cut===
====Case: cut=20==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-cut-mrcImageCTFCompensationForTiltImage.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0.01 (7, 7, 0)<br> 
				255 (25, 20, 0)<br> 
				118.004<br> 
				59.0793<br> 
				0.738491<br></p> 
			</td> 
		</tr> 
	</table>