View source for ctfDeterminationFromPhaseComparison

'''ctfDeterminationFromPhaseComparison''' is [[Eos]]'s [[Command]] that determines [[CTF]] from Phase Comparison.


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]](FFT)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-r</td> 
				<td>Essential</td> 
				<td>Reference: [[mrcImage]](FFT)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[ASCII]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-kV</td> 
				<td>Optional</td> 
				<td>[[Acceleration voltage]]: [kV]</td> 
				<td>200</td> 
			</tr> 
			<tr> 
				<td>-Cs</td> 
				<td>Optional</td> 
				<td>[[Spherical aberration coefficient]]: [mm]</td> 
				<td>2.1</td> 
			</tr> 
			<tr> 
				<td>-df</td> 
				<td>Optional</td> 
				<td>Defocus[A]: (mindf, maxdf, deldf)</td> 
				<td>(0.0, 200000, 1000)</td> 
			</tr> 
			<tr> 
				<td>-AoverP</td> 
				<td>Optional</td> 
				<td>AoverP: [A]: (minAoverP, maxAoverP, delAoverP)</td> 
				<td>(0.0, 1.0, 0.01)</td> 
			</tr> 
			<tr> 
				<td>-Rmax</td> 
				<td>Optional</td> 
				<td>Max Spatial frequency: [/A]</td> 
				<td>0.1</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 
Currently, no effect about -kV, -Cs, -df, and -AboveP.<br>
<br>

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td></td> 
			</tr> 
		</table>
<br>

== Execution example ==
===[[Media:Input-B120-CTF.fft | Input file]] image===
	<table> 
		<tr> 
			<td>[[File:Input-B120-CTF.png]]<br>
			<td><p align="left">Size<br> 
				Mode<br> 
				Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">(        80,         80,          1)<br> 
				mrcComplexFloatFT <br> 
				0.000514398 (78, 51, 0)<br> 
				1684.3 (0, 0, 0)<br> 
				9.67542<br> 
				65.3969<br> 
				0.817461<br></p> 
			</td> 
		</tr> 
	</table> 
<br>

===[[Media:Input-B120.fft | Reference file]] image===
	<table> 
		<tr> 
			<td>[[File:Input-B120-FFT.png]]</td> 
			<td><p align="left">Size<br> 
				Mode<br> 
				Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">(        80,         80,          1)<br> 
				mrcComplexFloatFT <br> 
				0.00776821 (75, 37, 0)<br> 
				1684.3 (0, 0, 0)<br> 
				9.41977<br> 
				61.1799<br> 
				0.764749<br></p> 
			</td> 
		</tr> 
	</table>
<br>

=== Case: Options only essential ===
<div>Output</div>
<pre>
bunbo =   27020.787541 bunshi =    8814.005537
RESULT=        0.326194
</pre>
<br>

=== Option -Rmax===
====Case: Rmax=0.5==== 
<div>Output</div>
<pre>
bunbo =   30553.044231 bunshi =    8684.154471
RESULT=        0.284232
</pre>
<br>