View source for mrcImageMakeSphere

'''mrcImageMakeSphere''' is [[Eos]]'s [[Command]] that makes sphere or circle.


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input: [[mrcImage]](Template file)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output: [[mrcImage]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-C</td> 
				<td>Optional</td> 
				<td>Cetnter position of Sphere (Cx, Cy, Cz)</td> 
				<td>(0, 0, 0)</td> 
			</tr> 
			<tr> 
				<td>-or</td> 
				<td>Essential</td> 
				<td>Outer Radius (pixel)</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-ir</td> 
				<td>Optional</td> 
				<td>Inner Radius (pixel)</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-r</td> 
				<td>Optional</td> 
				<td>Center Radius (pixel): For mode 1 only.</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-v</td> 
				<td>Optional</td> 
				<td>Value of sphere</td> 
				<td>10.0</td> 
			</tr> 
			<tr> 
				<td>-Other</td> 
				<td>Optional</td> 
				<td>Other acceptors.  For FRET Calculation.</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td>Constant</td> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>Gaussian</td> 
			</tr> 
		</table> 


== Execution example ==
=== Input file's image ===
	<table> 
		<tr> 
			<td>[[File:Input-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				2 (35, 35, 5)<br> 
				0.384947<br> 
				0.605556<br> 
				0.00086508<br></p> 
			</td> 
		</tr> 
	</table> 

=== Example of options only essential ===
====Case: or=30====
	<table> 
		<tr> 
			<td>[[File:Outdata-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (31, 0, 0)<br> 
				310 (0, 0, 0)<br> 
				21.7371<br> 
				67.4353<br> 
				0.806006<br></p> 
			</td> 
		</tr> 
	</table> 

=== Option -C===
====Case: C=(35, 35, 50), or=30==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-C-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				610 (35, 50, 0)<br> 
				161.544<br> 
				215.939<br> 
				2.58096<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -ir===
====Case: ir=15, C=(35, 35, 50), or=30==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-ir-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				510 (31, 34, 0)<br> 
				141.549<br> 
				185.58<br> 
				2.21811<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -v===
====Case: v=20, C=(35, 35, 50), or=30==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-v-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0 (0, 0, 0)<br> 
				1220 (35, 50, 0)<br> 
				323.089<br> 
				431.878<br> 
				5.16193<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -m===
====Case: m=1, C=(35, 35, 50), or=30==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-m1-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">0.0246775 (0, 0, 0)<br> 
				503.861 (31, 42, 0)<br> 
				154.591<br> 
				170.165<br> 
				2.03386<br></p> 
			</td> 
		</tr> 
	</table>

=== Option -r===
====Case: r=5, m=1, C=(35, 35, 50), or=30==== 
	<table> 
		<tr> 
			<td>[[File:Outdata-m1r-mrcImageMakeSphere.png]]</td> 
			<td><p align="left">Min<br> 
				Max<br> 
				Mean<br> 
				SD<br> 
				SE<br></p> 
			</td> 
			<td><p align="left">2.86426 (0, 0, 0)<br> 
				495.602 (35, 46, 0)<br> 
				165.528<br> 
				140.716<br> 
				1.68187<br></p> 
			</td> 
		</tr> 
	</table>