View source for mrcImageOrientationSearchByHybridization

'''mrcImageOrientationSearchByHybridization''' is [[Eos]]'s [[Command]].


== List of option ==
=== Main option ===
		<table border="1">
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-I</td> 
				<td>Essential</td> 
				<td>Input: [[ASCII]](File List)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Essential</td> 
				<td>Output(Header)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-e</td> 
				<td>Essential</td> 
				<td>Output(Extension)</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-ir</td> 
				<td>Optional</td> 
				<td>IncreaseRate</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-hpn</td> 
				<td>Optional</td> 
				<td>HybridizationPointNumber(The number of hybridization points)</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-ms</td> 
				<td>Optional</td> 
				<td>ModeOfSelection</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-ird</td> 
				<td>Optional</td> 
				<td>InitialRandomData</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
		</table> 
<br>

=== -m details ===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td>create children angle file</td> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>do not create children angle file , create match angle file</td> 
			</tr> 
		</table> 
<br>

===-ir  details===

		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>Increase number is 45 (filenum = 10)</td> 
			</tr> 
			<tr> 
				<td>2</td> 
				<td>Increase number is 90 (filenum = 10)</td> 
			</tr> 
		</table> 
<br>

===-ms  details===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td>random</td> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>myself (-ird)</td> 
			</tr> 
		</table> 
<br>

===-I  format===
<pre>
childrenfile0
childrenfile1
.
.
.

</pre>

<div>childrenfile format</div>
<pre>
filename RotMode  phi  theta  psi
     .               .          .       .       .
     .               .          .       .       .
     .               .          .       .       .

</pre>
<br>

== Execution example ==
===Input file's data===
<pre>
/Eos/Input-file0.txt
/Eos/Input-file1.txt

</pre>
<br>

<div>Input-file0.txt's data</div>
<pre>
/Eos/img/Input0	ZONS	0	0	0
/Eos/img/Input1	ZONS	0	45	0
/Eos/img/Input2	ZONS	0	0	45

</pre>
<br>

<div>Input-file1.txt's data</div>
<pre>
/Eos/img/Input3	ZONS	90	0	0
/Eos/img/Input4	ZONS	90	30	0
/Eos/img/Input5	ZONS	90	60	0

</pre>
<br>

=== Example of options only essential ===
<div>Output</div>
<pre>
       1.000000        0.000000        0.000000 
       0.000000        1.000000        0.000000 
       0.000000        0.000000        1.000000 
       0.000000        0.000000        0.000000 
       0.707107        0.000000        0.707107 
       0.000000        1.000000        0.000000 
      -0.707107        0.000000        0.707107 
       0.000000        0.000000        0.000000 
       0.707107       -0.707107        0.000000 
       0.707107        0.707107        0.000000 
       0.000000        0.000000        1.000000 
       0.000000        0.000000        0.000000 
       1.000000        0.000000        0.000000 
       0.000000        1.000000        0.000000 
       0.000000        0.000000        1.000000 
       0.000000        0.000000        0.000000 
       1.000000       -0.000000       -0.000000 
      -0.000000        0.866025       -0.500000 
       0.000000        0.500000        0.866025 
       0.000000        0.000000        0.000000 
       1.000000       -0.000000       -0.000000 
      -0.000000        0.500000       -0.866025 
       0.000000        0.866025        0.500000 
       0.000000        0.000000        0.000000 
HybridizationPoint = 1 FileNum = 1
</pre>
<br>

<div>In case of o=/Eos/Outdata, e=txt, it outputs by filename as the following.</div>
<pre>
/Eos/Outdata-0.txt
/Eos/Outdata-1.txt
/Eos/Outdata-2.txt
</pre>
<br>

<div>Outdata-0.txt's data</div>
<pre>
/Eos/img/Input3 ZONS   0.0   0.0   0.0
/Eos/img/Input1 ZONS   0.0  45.0   0.0
/Eos/img/Input2 ZONS  45.0   0.0   0.0
</pre>
<br>

<div>Outdata-1.txt's data</div>
<pre>
/Eos/img/Input0 ZONS   0.0   0.0   0.0
/Eos/img/Input1 ZONS   0.0  45.0   0.0
/Eos/img/Input2 ZONS  45.0   0.0   0.0
</pre>
<br>

<div>Outdata-2.txt's data</div>
<pre>
/Eos/img/Input3 ZONS   0.0   0.0   0.0
/Eos/img/Input4 ZONS  90.0  30.0 270.0
/Eos/img/Input5 ZONS  90.0  60.0 270.0
</pre>
<br>

<br>