View source for mrcImageSmoothing

'''mrcImageSmoothing''' is [[Eos]]'s [[Command]] that performs Nonlinear smoothing [[mrcImage]].

== List of option ==
=== Main option ===
		<table border="1"> 
			<div align="left"> 
			<tr> 
				<th>Option</th> 
				<th>Essential/Optional</th> 
				<th>Description</th> 
				<th>Default</th> 
			</tr> 
			<tr> 
				<td>-i</td> 
				<td>Essential</td> 
				<td>Input名: [[mrcImage]]</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-o</td> 
				<td>Optional</td> 
				<td>Output名: [[mrcImage]]</td> 
				<td>stdout(Standard output by default）</td> 
			</tr> 
			<tr> 
				<td>-sx</td> 
				<td>Optional</td> 
				<td>x of Kernel Size</td> 
				<td>3</td> 
			</tr> 
			<tr> 
				<td>-sy</td> 
				<td>Optional</td> 
				<td>y of Kernel Size</td> 
				<td>3</td> 
			</tr> 
			<tr> 
				<td>-sz</td> 
				<td>Optional</td> 
				<td>z of Kernel Size</td> 
				<td>3</td> 
			</tr> 
			<tr> 
				<td>-r</td> 
				<td>Optional</td> 
				<td>Radius of Kernel Size</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-sigma</td> 
				<td>Optional</td> 
				<td>Sigma (For m=4)</td> 
				<td>2.0</td> 
			</tr> 
			<tr> 
				<td>-times</td> 
				<td>Optional</td> 
				<td>Repeat time</td> 
				<td>1</td> 
			</tr> 
			<tr> 
				<td>-c</td> 
				<td>Optional</td> 
				<td>ConfigurationFile</td> 
				<td>NULL</td> 
			</tr> 
			<tr> 
				<td>-m</td> 
				<td>Optional</td> 
				<td>Mode</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-M</td> 
				<td>Optional</td> 
				<td>Mode2</td> 
				<td>0</td> 
			</tr> 
			<tr> 
				<td>-h</td> 
				<td>Optional</td> 
				<td>Help</td> 
				<td>　</td> 
			</tr> 
			</div> 
		</table>

===-m  details===
	<table border="1"> 
		<div align="left"> 
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr>
				<td>1</td>
				<td>Median filter</td>
			</tr> 
			<tr>
				<td>2</td>
				<td>Mean filter </td>
			</tr> 
			<tr>
				<td>3</td> 
				<td>Surface Fit filter </td>
			</tr> 
			<tr>
				<td>4</td>
				<td>Lee-Sigma filter</td>
			</tr> 
		</div> 
	</table>
<div>m=0, at the default setting. Therefore, It is error if -m isn't set.</div>
	<br>

===-M  details===
		<table border="1">
			<tr> 
				<th>Value</th> 
				<th>Description</th> 
			</tr> 
			<tr> 
				<td>0</td> 
				<td>Kernel is cube. : required argumnent: -sx, -sy, [-sz]</td> 
			</tr> 
			<tr> 
				<td>1</td> 
				<td>Kernel is sphere.(Only mode 1 supported) : required argumnent: -r </td> 
			</tr> 
		</table>

== Execution example ==

Example of Option -h

 $ mrcImageSmoothing  -h
 Usage: /home/people/tacyas/Eos/bin/X86LINUX64/mrcImageSmoothing
 Options:
     [-i[nput]            In                  (NULL      )] :Essential :InputDataFile
     [-o[utput]           Out                 (NULL      )] :Essential :OutputDataFile
     [-sx                 sx                  (3         )] :Optional  :x of Kernel Size
     [-sy                 sy                  (3         )] :Optional  :y of Kernel Size
     [-sz                 sz                  (3         )] :Optional  :z of Kernel Size
     [-r                  r                   (1         )] :Optional  :Radius of Kernel Size
     [-sigma              sigma               (2.0       )] :Optional  :Sigma for Lee-Sigma
     [-m[ode]             mode                (0         )] :Optional  :Mode
     [-M[ode2]            mode2               (0         )] :Optional  :Mode
     [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
 >>> Mode <<<< 
     1: Median filter
     2: Mean filter 
     3: Surface Fit filter
     4: Lee-Sigma filter
 >>> Mode2 <<<< 
     0: Kernel is cube. : required argumnent: -sx, -sy, [-sz]
     1: Kernel is sphere.(Only mode 1 supported) : required argumnent: -r


===Input file's image===
	<table>
		<tr>
			<td>[[File:B120.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-65.0178<br>
				94.4699<br>
				4.85274<br>
				20.4635<br>
				0.255794<br></p>
			</td>
		</tr>
	</table>
<br>

===Option -m, -M===
====Case: m=1====
	<table>
		<tr>
			<td>[[File:Smo.m1.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-41.8721<br>
				65.9659<br>
				4.7617<br>
				14.3083<br>
				0.178854<br></p>
			</td>
			<td>Case: M=0<br>
			with -sx=9,-sy=9<br>
				　　－－－－－－＞</td>
			<td>[[File:Smo.m1M0x9y9.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-54.6403<br>
				54.0815<br>
				4.773<br>
				13.5848<br>
				0.16981<br></p>
			</td>
		</tr>
		<tr>
			<td></td>
			<td></td>
			<td></td>
			<td>Case: M=1<br>
			with -r=5<br>
				　　－－－－－－＞</td>
			<td>[[File:Smo.m1M1r5.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-54.6403<br>
				55.7056<br>
				4.73966<br>
				13.9823<br>
				0.174779<br></p>
			</td>
		</tr>
	</table>
<br>
	
====Case: m=2====
	<table>
		<tr>
			<td>[[File:Smo.m2.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-41.8721<br>
				67.5276<br>
				4.82079<br>
				13.8056<br>
				0.17257<br></p>
			</td>
			<td>Case: M=0<br>
			with -sx=9,-sy=9<br>
				　　－－－－－－＞</td>
			<td>[[File:Smo.m2M0x9y9.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-54.6403<br>
				54.0644<br>
				4.89358<br>
				13.5214<br>
				0.169018<br></p>
			</td>
		</tr>
	</table>
<br>

====Case: m=3====
	<table>
		<tr>
			<td>[[File:Smo.m3.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-41.8721<br>
				83.4967<br>
				4.85411<br>
				17.5032<br>
				0.21879<br></p>
			</td>
			<td>Case: M=0<br>
			with -sx=9,-sy=9<br>
				　　－－－－－－＞</td>
			<td>[[File:Smo.m3M0x9y9.center-mrcImageSmoothing.png]]</td>
			<td><p align="left">Min<br>
				Max<br>
				Mean<br>
				SD<br>
				SE<br></p>
			</td>
			<td><p align="left">-54.6403<br>
				56.99<br>
				4.87303<br>
				14.4517<br>
				0.180646<br></p>
			</td>
		</tr>
	</table>
<br>