Difference between revisions of "Integration Commands"
From EosPedia
(→List of Integrated Commands) |
(→CTF Correction) |
||
| Line 5: | Line 5: | ||
===[[Image Correction]]=== | ===[[Image Correction]]=== | ||
====[[CTF Correction]]==== | ====[[CTF Correction]]==== | ||
| + | Main items described in the CTF Correction are the following: | ||
| + | |||
Apply [[CTF Correction]] to [[tiff]] files: ([[:Media:Makefile-CTFCorrection.zip|Makefile only ]]) ([https://sourceforge.jp/projects/eos/scm/git/tutorial/archive/master/CTFCorrection/CTFCorrection1/ all files])<br> | Apply [[CTF Correction]] to [[tiff]] files: ([[:Media:Makefile-CTFCorrection.zip|Makefile only ]]) ([https://sourceforge.jp/projects/eos/scm/git/tutorial/archive/master/CTFCorrection/CTFCorrection1/ all files])<br> | ||
*Use: [[CTF Correction#Example 1 CTF-compensation using Makefile]]<br> | *Use: [[CTF Correction#Example 1 CTF-compensation using Makefile]]<br> | ||
| Line 19: | Line 21: | ||
*Use 2: [[CTF補正#例7 デフォーカスの異なる画像の平均化2]]<br> | *Use 2: [[CTF補正#例7 デフォーカスの異なる画像の平均化2]]<br> | ||
<br> | <br> | ||
| − | |||
===[[Single particle analysis]]=== | ===[[Single particle analysis]]=== | ||
Revision as of 11:51, 15 July 2017
Contents
List of Integrated Commands
Here, we show the list of Integrated Commands provided in Eos. Currently, most of them is written by Makefile or bash. We will provide those written by PIONE in the near future.
Image Correction
CTF Correction
Main items described in the CTF Correction are the following:
Apply CTF Correction to tiff files: (Makefile only ) (all files)
CTF Correction using an input file : (Makefile only)
(all files)
- Use 1: CTF補正#例2 Makefileを使ったCTF補正2
- Use 2: CTF補正#例3 ジーメンススターでCTFの影響を確認する
- Use 3: CTF補正#例4 ノイズを含んだ画像でのCTFの影響
同一視野でデフォーカス毎のCTF補正画像を比較する: (Makefileのみ) (全ファイル)
上記のコマンドには右記のコマンドも必要です。 (Makefileのみ) (全ファイル)
- 使用方法: CTF補正#例5 デフォーカス毎の画像の違い
同一視野でデフォーカスの異なる入力ファイルを2つ作成してCTF補正を行う: (Makefileのみ) (全ファイル)
- Use 1: CTF補正#例6 デフォーカスの異なる画像の平均化
- Use 2: CTF補正#例7 デフォーカスの異なる画像の平均化2
