Difference between revisions of "mrcSinogramFETcalcSDforNormalize"

From EosPedia
Jump to: navigation, search
(Created page with "'''mrcSinogramFETcalcSDforNormalize''' is Eos's Command. == List of option == === Main option === <table border="1"> <tr> <th>Option</th> <th>Essentia...")
 
(→‎s=3)
 
(2 intermediate revisions by the same user not shown)
Line 70: Line 70:
 
<tr>  
 
<tr>  
 
<td>0</td>  
 
<td>0</td>  
−
<td>SDlibraryFileから読み出して-o, -owへ出力する(必須オプション: -l)</td>  
+
<td>Read SDlibraryFile,  and Output to -o, -ow.(Essential: -l)</td>  
 
</tr>  
 
</tr>  
 
<tr>  
 
<tr>  
 
<td>1</td>  
 
<td>1</td>  
−
<td>SDlibraryFileを上書きする(必須オプション: -s, -i, -l)</td>  
+
<td>SDlibraryFile is Overwrite(Essential: -s, -i, -l)</td>  
 
</tr>  
 
</tr>  
 
</table>  
 
</table>  
−
<div>SDlibraryFileは[[array2mrc]]にて作成できる(サイズ: x=(Featuresの数 + 1), y=6(-ow を使用する場合はy=8), z=0, data: 全て0.0)</div>
+
<div>SDlibraryFile is created by [[array2mrc]]. (Size: x=(FeaturesNum + 1), y=6(if you use -ow, y=8), z=0, data: all 0.0)</div>
 
<br>
 
<br>
  
Line 183: Line 183:
  
 
=====s=2=====
 
=====s=2=====
−
<div>-i: file2を使用して実行</div>
+
<div>-i: using file2</div>
 
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
 
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
 
<pre>
 
<pre>
Line 198: Line 198:
  
 
=====s=3=====
 
=====s=3=====
−
<div>-i: file3を使用して実行</div>
+
<div>-i: using file3</div>
 
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
 
<div>-l 's data by [[mrcImageMakeDump]](m=8)</div>
 
<pre>
 
<pre>

Latest revision as of 00:58, 7 August 2014

mrcSinogramFETcalcSDforNormalize is Eos's Command.


List of option

Main option

Option Essential/Optional Description Default
-i Optional Input: mrcImage(FET) NULL
-s Optional selectFETfile 1
-l Essential SDlibraryFile: mrcImage NULL
-o Optional Output: mrcImage(SD) NULL
-ow Optional Output: mrcImage(Weight)
-c Optional ConfigurationFile NULL
-m Optional Mode 0
-h Optional Help 　


-m details

Value Description
0 Read SDlibraryFile, and Output to -o, -ow.(Essential: -l)
1 SDlibraryFile is Overwrite(Essential: -s, -i, -l)
SDlibraryFile is created by array2mrc. (Size: x=(FeaturesNum + 1), y=6(if you use -ow, y=8), z=0, data: all 0.0)


-s details

Value Description
0 noise-free refarence FETdata
1 no-smoothing FET data
Otherwise smoothed FET data


Execution example

Input file's data

-i 's file
file0
file1
file2: Smoothing data of file1
file3: Smoothing data of file1


-l 's file
file4: by mrcImageMakeDump(m=8)
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0
file5: by mrcImageMakeDump(m=8)
              1     6.10919e-05       0.0512343       0.0529243 
              1       0.0402937    -0.000261387         2.38748 
              1     5.77048e-05       0.0515095        0.053126 
              1       0.0401005    -0.000252081         2.39499 
              1     2.88663e+08     2.28348e+08     2.43567e+08 
              1         37006.6         23393.5         24685.6 
              1     4.11992e-05       0.0337029       0.0439789 
              1       0.0440661     -0.00141426         2.35982


Example of options only essential

-l: using file5
-o 's data by mrcImageMakeDump(m=8)
    2.06095e+08     1.49409e+08      2.0163e+08


-ow 's data by mrcImageMakeDump(m=8)
              0     2.24369e-10     2.17289e-10


Option -m

Case: m=1

-l: using file4
Case: s=0
-i: using file0
-l 's data by mrcImageMakeDump(m=8)
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              1     4.11992e-05       0.0337029       0.0439789 
              1       0.0440661     -0.00141426         2.35982


Case: s=1
-i: using file1
-l 's data by mrcImageMakeDump(m=8)
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              1     2.88663e+08     2.28348e+08     2.43567e+08 
              1         37006.6         23393.5         24685.6 
              0               0               0               0 
              0               0               0               0


s=2
-i: using file2
-l 's data by mrcImageMakeDump(m=8)
              0               0               0               0 
              0               0               0               0 
              1     5.77048e-05       0.0515095        0.053126 
              1       0.0401005    -0.000252081         2.39499 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0


s=3
-i: using file3
-l 's data by mrcImageMakeDump(m=8)
              1     6.10919e-05       0.0512343       0.0529243 
              1       0.0402937    -0.000261387         2.38748 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0 
              0               0               0               0


Retrieved from "http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcSinogramFETcalcSDforNormalize&oldid=2960"