Difference between revisions of "mrcImageMultiCTFCompensation"

Revision as of 05:51, 22 September 2014 (view source) Kinoshita (Talk | contribs) (→‎Execution example) ← Older edit		Latest revision as of 08:10, 22 September 2014 (view source) Kinoshita (Talk | contribs) (→‎Case: m=17)
(15 intermediate revisions by the same user not shown)
Line 214:		Line 214:
	0.165995<br></p>		0.165995<br></p>
	</td>		</td>
−	<td>[[File:Input-B120-CTF2-Cnp.png]]<br>	+	<td><p align="center">[[File:Input-B120-CTF2-Cnp.png]]<br>
−	case: CTF Correction at single<br>	+	case: CTF Correction at single<br> </p>
	</td>		</td>
	<td><p align="left">Min<br>		<td><p align="left">Min<br>
Line 248:		Line 248:
	0.116326<br></p>		0.116326<br></p>
	</td>		</td>
−	<td>[[File:Input-B120-CTF3-Cnp.png]]<br>	+	<td><p align="center">[[File:Input-B120-CTF3-Cnp.png]]<br>
−	case: CTF Correction at single<br>	+	case: CTF Correction at single<br> </p>
	</td>		</td>
	<td><p align="left">Min<br>		<td><p align="left">Min<br>
Line 282:		Line 282:
	0.136272<br></p>		0.136272<br></p>
	</td>		</td>
−	<td>[[File:Input-B120-CTF4-Cnp.png]]<br>	+	<td><p align="center">[[File:Input-B120-CTF4-Cnp.png]]<br>
−	case: CTF Correction at single<br>	+	case: CTF Correction at single<br> </p>
	</td>		</td>
	<td><p align="left">Min<br>		<td><p align="left">Min<br>
Line 316:		Line 316:
	0.112143<br></p>		0.112143<br></p>
	</td>		</td>
−	<td>[[File:Input-B120-CTF5-Cnp.png]]<br>	+	<td><p align="center">[[File:Input-B120-CTF5-Cnp.png]]<br>
−	case: CTF Correction at single<br>	+	case: CTF Correction at single<br> </p>
	</td>		</td>
	<td><p align="left">Min<br>		<td><p align="left">Min<br>
Line 335:		Line 335:
	<br>		<br>
−	=== Example of options only essential ===	+	=== Case: Options only essential ===
	<div>-o 's image</div>		<div>-o 's image</div>
	<table>		<table>
Line 346:		Line 346:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-950.729 (30, 33, 0)<br>	+	<td><p align="left">-40.2801 (48, 52, 0)<br>
−	91.5373 (61, 58, 0)<br>	+	104.151 (36, 38, 0)<br>
−	-199.582<br>	+	1.24049e-07<br>
−	202.06<br>	+	18.8015<br>
−	3.15719<br></p>	+	0.235019<br></p>
	</td>		</td>
	</tr>		</tr>
Line 365:		Line 365:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.0117408 (32, 31, 0)<br>	+	<td><p align="left">7.30857e-06 (75, 37, 0)<br>
−	12773.2 (0, 0, 0)<br>	+	378.143 (42, 0, 0)<br>
−	30.7184<br>	+	4.45621<br>
−	365.42<br>	+	19.8824<br>
−	5.70969<br></p>	+	0.24853<br></p>
	</td>		</td>
	</tr>		</tr>
−	</table>	+	</table>
−		+
	=== Option -W===		=== Option -W===
−	====Case: W=0.5====	+	====Case: W=1====
	<div>-o 's image</div>		<div>-o 's image</div>
	<table>		<table>
Line 387:		Line 386:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-178.794 (29, 32, 0)<br>	+	<td><p align="left">-17.0714 (27, 31, 0)<br>
−	31.7025 (15, 31, 0)<br>	+	23.2441 (40, 52, 0)<br>
−	-7.67623<br>	+	5.81327e-09<br>
−	35.9686<br>	+	4.65713<br>
−	0.562009<br></p>	+	0.0582141<br></p>
	</td>		</td>
	</tr>		</tr>
Line 406:		Line 405:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.000786083 (61, 50, 0)<br>	+	<td><p align="left">3.22907e-07 (0, 0, 0)<br>
−	656.031 (1, 0, 0)<br>	+	62.9461 (46, 78, 0)<br>
−	5.93815<br>	+	1.28884<br>
−	40.2896<br>	+	4.68843<br>
−	0.629525<br></p>	+	0.0586053<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	=== Option -WR===		=== Option -WR===
Line 428:		Line 426:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-153.883 (30, 32, 0)<br>	+	<td><p align="left">-11.5567 (27, 31, 0)<br>
−	23.7931 (15, 31, 0)<br>	+	15.7516 (24, 39, 0)<br>
−	-7.67623<br>	+	1.23206e-08<br>
−	31.3292<br>	+	3.24282<br>
−	0.489519<br></p>	+	0.0405352<br></p>
	</td>		</td>
	</tr>		</tr>
Line 447:		Line 445:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">9.05608e-06 (60, 32, 0)<br>	+	<td><p align="left">2.72506e-08 (75, 37, 0)<br>
−	587.065 (1, 0, 0)<br>	+	45.7637 (46, 78, 0)<br>
−	4.29171<br>	+	0.700623<br>
−	35.7021<br>	+	3.33709<br>
−	0.557845<br></p>	+	0.0417136<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	=== Option -SinWin===		=== Option -SinWin===
Line 469:		Line 466:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-939.931 (30, 33, 0)<br>	+	<td><p align="left">-39.9332 (48, 52, 0)<br>
−	82.2886 (61, 59, 0)<br>	+	102.315 (36, 38, 0)<br>
−	-199.582<br>	+	1.52273e-07<br>
−	201.211<br>	+	18.7407<br>
−	3.14392<br></p>	+	0.234259<br></p>
	</td>		</td>
	</tr>		</tr>
Line 488:		Line 485:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0 (8, 0, 0)<br>	+	<td><p align="left">0 (40, 1, 0)<br>
−	12773.2 (0, 0, 0)<br>	+	378.143 (42, 0, 0)<br>
−	28.1205<br>	+	4.1815<br>
−	365.158<br>	+	19.8843<br>
−	5.70559<br></p>	+	0.248553<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	=== Option -ctfMode===		=== Option -ctfMode===
Line 510:		Line 506:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-1243.15 (30, 31, 0)<br>	+	<td><p align="left">-24.2681 (68, 48, 0)<br>
−	534.543 (1, 0, 0)<br>	+	207.103 (36, 38, 0)<br>
−	-7.92556e-07<br>	+	-1.0943e-09<br>
−	404.255<br>	+	45.5848<br>
−	6.31648<br></p>	+	0.56981<br></p>
−	</td>	+	</td>
	</tr>		</tr>
	</table>		</table>
Line 530:		Line 526:
	</td>		</td>
	<td><p align="left">0 (0, 0, 0)<br>		<td><p align="left">0 (0, 0, 0)<br>
−	12267.8 (1, 0, 0)<br>	+	1280.12 (41, 0, 0)<br>
−	33.7224<br>	+	6.47008<br>
−	477.688<br>	+	51.7633<br>
−	7.46387<br></p>	+	0.647041<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	====Case: ctfMode=256====		====Case: ctfMode=256====
Line 550:		Line 545:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-501.951 (1, 0, 0)<br>	+	<td><p align="left">-191.228 (36, 38, 0)<br>
−	1288.01 (33, 32, 0)<br>	+	26.7763 (67, 30, 0)<br>
−	-2.09152e-06<br>	+	-3.91243e-08<br>
−	404.255<br>	+	45.3127<br>
−	6.31648<br></p>	+	0.566409<br></p>
	</td>		</td>
	</tr>		</tr>
Line 570:		Line 565:
	</td>		</td>
	<td><p align="left">0 (0, 0, 0)<br>		<td><p align="left">0 (0, 0, 0)<br>
−	12267.8 (1, 0, 0)<br>	+	1280.12 (41, 0, 0)<br>
−	33.7224<br>	+	5.38217<br>
−	477.688<br>	+	51.6411<br>
−	7.46387<br></p>	+	0.645514<br></p>
−	</td>	+	</td>
	</tr>		</tr>
	</table>		</table>
−
	====Case: ctfMode=257====		====Case: ctfMode=257====
Line 590:		Line 584:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-50.4152 (5, 2, 0)<br>	+	<td><p align="left">-90.5402 (36, 37, 0)<br>
−	1009.22 (33, 32, 0)<br>	+	39.3153 (49, 51, 0)<br>
−	199.582<br>	+	-1.30477e-07<br>
−	202.06<br>	+	18.1267<br>
−	3.15719<br></p>	+	0.226584<br></p>
	</td>		</td>
	</tr>		</tr>
Line 609:		Line 603:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.0117408 (32, 31, 0)<br>	+	<td><p align="left">1.17451e-06 (75, 37, 0)<br>
−	12773.2 (0, 0, 0)<br>	+	378.143 (42, 0, 0)<br>
−	30.7184<br>	+	3.33762<br>
−	365.42<br>	+	19.4523<br>
−	5.70969<br></p>	+	0.243154<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	=== Option -m===		=== Option -m===
−	====Case: m=1, W=0.5====	+	====Case: m=1, W=1====
	=====Case: No other settings=====		=====Case: No other settings=====
	<div>-o 's image</div>		<div>-o 's image</div>
Line 632:		Line 625:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-175.249 (29, 32, 0)<br>	+	<td><p align="left">-9.82557 (48, 51, 0)<br>
−	49.852 (15, 31, 0)<br>	+	92.1757 (49, 32, 0)<br>
−	-1.99391<br>	+	6.14297<br>
−	37.3853<br>	+	14.8838<br>
−	0.584145<br></p>	+	0.186048<br></p>
−	</td>	+	</td>
	</tr>		</tr>
	</table>		</table>
Line 651:		Line 644:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.00642588 (59, 34, 0)<br>	+	<td><p align="left">0.00108315 (40, 41, 0)<br>
−	681.324 (34, 0, 0)<br>	+	491.438 (0, 0, 0)<br>
−	6.41058<br>	+	4.1562<br>
−	40.1134<br>	+	18.0735<br>
−	0.626771<br></p>	+	0.225919<br></p>
	</td>		</td>
	</tr>		</tr>
Line 662:		Line 655:
	<div>-log 's data</div>		<div>-log 's data</div>
	<pre>		<pre>
−	iter          0 : rms   -1.965984e+01 : min    1.000000e+06	+	iter          0 : rms   1.013455e+01 : min    1.000000e+06
		+	iter          1 : rms    1.355871e+00 : min    1.013455e+01
		+	iter          2 : rms    8.647722e-01 : min    1.355871e+00
		+	iter          3 : rms    6.229646e-01 : min    8.647722e-01
		+	iter          4 : rms    4.844930e-01 : min    6.229646e-01
		+	iter          5 : rms    3.971868e-01 : min    4.844930e-01
		+	iter          6 : rms    3.377429e-01 : min    3.971868e-01
		+	iter          7 : rms    2.951728e-01 : min    3.377429e-01
		+	iter          8 : rms    2.629044e-01 : min    2.951728e-01
		+	iter          9 : rms    2.370113e-01 : min    2.629044e-01
	</pre>		</pre>
−	====Case: solventMode=1====	+	=====Case: solventMode=1=====
	<div>-o 's image</div>		<div>-o 's image</div>
	<table>		<table>
Line 676:		Line 678:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-220.728 (30, 32, 0)<br>	+	<td><p align="left">-20.1029 (48, 51, 0)<br>
−	42.9295 (15, 31, 0)<br>	+	87.1488 (49, 32, 0)<br>
−	-9.08899<br>	+	2.38926<br>
−	47.6864<br>	+	14.7396<br>
−	0.7451<br></p>	+	0.184245<br></p>
	</td>		</td>
	</tr>		</tr>
Line 695:		Line 697:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.00745064 (63, 30, 0)<br>	+	<td><p align="left">0.00627302 (76, 14, 0<br>
−	916.491 (1, 0, 0)<br>	+	222.088 (42, 0, 0)<br>
−	7.81324<br>	+	4.12707<br>
−	53.2299<br>	+	15.7098<br>
−	0.831717<br></p>	+	0.196372<br></p>
	</td>		</td>
	</tr>		</tr>
Line 706:		Line 708:
	<div>-log 's data</div>		<div>-log 's data</div>
	<pre>		<pre>
−	iter          0 : rms   -3.997643e+00 : min    1.000000e+06	+	iter          0 : rms   3.709238e+01 : min    1.000000e+06
		+	iter          1 : rms    3.539059e+00 : min    3.709238e+01
		+	iter          2 : rms    1.971014e+00 : min    3.539059e+00
		+	iter          3 : rms    1.314187e+00 : min    1.971014e+00
		+	iter          4 : rms    9.704149e-01 : min    1.314187e+00
		+	iter          5 : rms    7.649823e-01 : min    9.704149e-01
		+	iter          6 : rms    6.304888e-01 : min    7.649823e-01
		+	iter          7 : rms    5.362647e-01 : min    6.304888e-01
		+	iter          8 : rms    4.668152e-01 : min    5.362647e-01
		+	iter          9 : rms    4.135905e-01 : min    4.668152e-01
	</pre>		</pre>
−		+	=====Case: solventSTD=2.0, solventMode=1=====
−	====Case: solventSTD=2.0, solventMode=1====	+
	<div>-o 's image</div>		<div>-o 's image</div>
	<table>		<table>
Line 721:		Line 731:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">342.42 (29, 32, 0)<br>	+	<td><p align="left">85.3666 (27, 31, 0)<br>
−	552.916 (15, 31, 0)<br>	+	146.065 (58, 33, 0)<br>
−	513.538<br>	+	101.654<br>
−	35.9686<br>	+	5.9911<br>
−	0.562009<br></p>	+	0.0748887<br></p>
	</td>		</td>
	</tr>		</tr>
Line 740:		Line 750:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.000751982 (61, 50, 0)<br>	+	<td><p align="left">0.00707058 (78, 44, 0)<br>
−	32866.4 (0, 0, 0)<br>	+	8132.32 (0, 0, 0)<br>
−	21.7463<br>	+	4.62714<br>
−	726.986<br>	+	143.824<br>
−	11.3592<br></p>	+	1.7978<br></p>
	</td>		</td>
	</tr>		</tr>
Line 751:		Line 761:
	<div>-log 's data</div>		<div>-log 's data</div>
	<pre>		<pre>
−	iter          0 : rms    7.485705e-01 : min    1.000000e+06	+	iter          0 : rms    1.424218e+00 : min    1.000000e+06
−	iter          1 : rms    3.354889e-01 : min    7.485705e-01	+	iter          1 : rms    2.156973e-01 : min    1.424218e+00
−	iter          2 : rms    2.279355e-01 : min    3.354889e-01	+	iter          2 : rms    1.394271e-01 : min    2.156973e-01
−	iter          3 : rms    1.763709e-01 : min    2.279355e-01	+	iter          3 : rms    1.043566e-01 : min    1.394271e-01
−	iter          4 : rms    1.463149e-01 : min    1.763709e-01	+	iter          4 : rms    8.473523e-02 : min    1.043566e-01
−	iter          5 : rms    1.267555e-01 : min    1.463149e-01	+	iter          5 : rms    7.243526e-02 : min    8.473523e-02
−	iter          6 : rms    1.130881e-01 : min    1.267555e-01	+	iter          6 : rms    6.412249e-02 : min    7.243526e-02
−	iter          7 : rms    1.030489e-01 : min    1.130881e-01	+	iter          7 : rms    5.819677e-02 : min    6.412249e-02
−	iter          8 : rms    9.539606e-02 : min    1.030489e-01	+	iter          8 : rms    5.380184e-02 : min    5.819677e-02
−	iter          9 : rms    8.939259e-02 : min    9.539606e-02	+	iter          9 : rms    5.044070e-02 : min    5.380184e-02
	</pre>		</pre>
−		+	=====Case: MaxIter=5, solventSTD=2.0, solventMode=1=====
−	====Case: MaxIter=5, solventSTD=2.0, solventMode=1====	+
	<div>-o 's image</div>		<div>-o 's image</div>
	<table>		<table>
Line 775:		Line 784:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">107.285 (29, 32, 0)<br>	+	<td><p align="left">35.7164 (27, 31, 0)<br>
−	317.781 (15, 31, 0)<br>	+	94.8793 (58, 33, 0)<br>
−	278.402<br>	+	52.0534<br>
−	35.9686<br>	+	5.94982<br>
−	0.562009<br></p>	+	0.0743728<br></p>
	</td>		</td>
	</tr>		</tr>
Line 794:		Line 803:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.000789315 (61, 50, 0)<br>	+	<td><p align="left">0.00307367 (71, 39, 0)<br>
−	17817.7 (0, 0, 0)<br>	+	4164.28 (0, 0, 0)<br>
−	14.3983<br>	+	3.33262<br>
−	395.41<br>	+	73.8045<br>
−	6.17827<br></p>	+	0.922556<br></p>
	</td>		</td>
	</tr>		</tr>
Line 805:		Line 814:
	<div>-log 's data</div>		<div>-log 's data</div>
	<pre>		<pre>
−	iter          0 : rms    7.485705e-01 : min    1.000000e+06	+	iter          0 : rms    1.424218e+00 : min    1.000000e+06
−	iter          1 : rms    3.354889e-01 : min    7.485705e-01	+	iter          1 : rms    2.156973e-01 : min    1.424218e+00
−	iter          2 : rms    2.279355e-01 : min    3.354889e-01	+	iter          2 : rms    1.394271e-01 : min    2.156973e-01
−	iter          3 : rms    1.763709e-01 : min    2.279355e-01	+	iter          3 : rms    1.043566e-01 : min    1.394271e-01
−	iter          4 : rms    1.463149e-01 : min    1.763709e-01	+	iter          4 : rms    8.473523e-02 : min    1.043566e-01
	</pre>		</pre>
−
	====Case: m=16====		====Case: m=16====
Line 824:		Line 832:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">-50.4152 (5, 2, 0)<br>	+	<td><p align="left">-90.5402 (36, 37, 0)<br>
−	1009.22 (33, 32, 0)<br>	+	39.3153 (49, 51, 0)<br>
−	199.582<br>	+	-1.13944e-07<br>
−	202.06<br>	+	18.1267<br>
−	3.15719<br></p>	+	0.226584<br></p>
	</td>		</td>
	</tr>		</tr>
Line 843:		Line 851:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.0117408 (32, 31, 0)<br>	+	<td><p align="left">1.17451e-06 (75, 37, 0)<br>
−	12773.2 (0, 0, 0)<br>	+	378.143 (42, 0, 0)<br>
−	30.7184<br>	+	3.33762<br>
−	365.42<br>	+	19.4523<br>
−	5.70969<br></p>	+	0.243154<br></p>
	</td>		</td>
	</tr>		</tr>
	</table>		</table>
−
	====Case: m=17====		====Case: m=17====
Line 864:		Line 871:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">161250 (60, 60, 0)<br>	+	<td><p align="left">-363.432 (24, 39, 0)<br>
−	1.85064e+06 (29, 32, 0)<br>	+	64206.9 (50, 53, 0)<br>
−	432887<br>	+	12232.5<br>
−	388639<br>	+	12224.9<br>
−	6072.49<br></p>	+	152.812<br></p>
	</td>		</td>
	</tr>		</tr>
Line 883:		Line 890:
	SE<br></p>		SE<br></p>
	</td>		</td>
−	<td><p align="left">0.00899138 (31, 33, 0)<br>	+	<td><p align="left">0.000769818 (62, 30, 0)<br>
−	2.77048e+07 (0, 0, 0)<br>	+	978599 (0, 0, 0)<br>
−	51930<br>	+	2152.97<br>
−	757226<br>	+	21751<br>
−	11831.7<br></p>	+	271.888<br></p>
	</td>		</td>
	</tr>		</tr>
Line 894:		Line 901:
	<div>-log 's data</div>		<div>-log 's data</div>
	<pre>		<pre>
−	iter          0 : rms    9.051428e-01 : min    1.000000e+06	+	iter          0 : rms    2.228456e+00 : min    1.000000e+06
−	iter          1 : rms    7.732108e-01 : min    9.051428e-01	+	iter          1 : rms    1.072463e+00 : min    2.228456e+00
−	iter          2 : rms    7.194946e-01 : min    7.732108e-01	+	iter          2 : rms    8.595473e-01 : min    1.072463e+00
−	iter          3 : rms    6.952064e-01 : min    7.194946e-01	+	iter          3 : rms    7.822678e-01 : min    8.595473e-01
−	iter          4 : rms    6.840820e-01 : min    6.952064e-01	+	iter          4 : rms    7.485957e-01 : min    7.822678e-01
−	iter          5 : rms    6.782160e-01 : min    6.840820e-01	+	iter          5 : rms    7.339871e-01 : min    7.485957e-01
−	iter          6 : rms    6.752780e-01 : min    6.782160e-01	+	iter          6 : rms    7.188863e-01 : min    7.339871e-01
−	iter          7 : rms    6.739355e-01 : min    6.752780e-01	+	iter          7 : rms    7.127621e-01 : min    7.188863e-01
−	iter          8 : rms    6.730211e-01 : min    6.739355e-01	+	iter          8 : rms    7.096454e-01 : min    7.127621e-01
−	iter          9 : rms    6.722654e-01 : min    6.730211e-01	+	iter          9 : rms    7.069848e-01 : min    7.096454e-01
	</pre>		</pre>

---

Latest revision as of 08:10, 22 September 2014

mrcImageMultiCTFCompensation is Eos's Command that performs CTF Correction to multiple images that have each other same field and different CTF. It outputs the average image of each image after CTF Correction.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: ASCII(File List)	stdin
-info2	Optional	Input: ASCII(File List)	stdin
-o	Essential	Output(average): mrcImage	stdout
-f	Optional	Output(average): mrcImage(FFT)	stdout
-W	Optional	WhiteNoise(Noise/Signal)	1.0
-WR	Optional	WhiteNoiseRaising	1.0
-SinWin	Optional	sin Windowing (R[/A]): (SinWinRmin, SinWinRmax)	(0.1, 1.0)
-MaxIter	Optional	Max Iteration	10
-ctfMode	Optional	CTFMode	1
-solventMode	Optional	If solvent flatterning is used, NEED	0
-solventSTD	Optional	If solvent flatterning is used as mode=1, NEED	-1.0
-Log	Optional	Log File Name	stderr
-c	Optional	ConfigurationFile	NULL
-m	Optional	Mode	0
-h	Optional	Help

-ctfMode details

Value	Description
0	Phase Only
1	Phase and Amplitude
+32	With Illumination Angle
+256	As Absolute Value

-m details

Value	Description
0	CTF-weighted compensation, CTF/(SQR(CTF) + (NS)^2)
+1	Adding solvent-flattening process
+16	Without phase flipping, in case of images after phase only correction.

-i format

filename0 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
filename1 deltaF[A] Cs[mm] kV[kV] ratioOfAmpToPhase
     .                .            .           .                   .
     .                .            .           .                   .
     .                .            .           .                   .

-Info2 format

filename0.ctfinfo 
filename1.ctfinfo 
          .
          .
          .

Execution example

-i data

Min Max Mean SD SE

0 (0, 0, 0) 255 (49, 32, 0) 21.0538 47.6709 0.595886

Use simulation images that is multiplied each different CTF to above image, as input file.

/Eos/img/Input-B120-CTF2.mrc 27000 2.1 200 0.1
/Eos/img/Input-B120-CTF3.mrc 9000 2.1 200 0.1
/Eos/img/Input-B120-CTF4.mrc 27000 2.1 400 0.1
/Eos/img/Input-B120-CTF5.mrc 27000 2.1 200 0.3

Min Max Mean SD SE

-67.2449 (35, 36, 0) 48.4524 (50, 51, 0) -5.60279e-08 13.2796 0.165995

case: CTF Correction at single

Min Max Mean SD SE

-49.3218 (28, 26, 0) 133.566 (37, 38, 0) 8.98254e-07 26.7724 0.334655

Min Max Mean SD SE

-57.5666 (25, 38, 0) 53.971 (44, 29, 0) -5.02996e-08 9.30611 0.116326

case: CTF Correction at single

Min Max Mean SD SE

-49.4192 (47, 51, 0) 137.108 (49, 32, 0) 5.49823e-07 19.7161 0.246452

Min Max Mean SD SE

-68.355 (24, 39, 0) 42.4746 (44, 26, 0) -3.45941e-08 10.9018 0.136272

case: CTF Correction at single

Min Max Mean SD SE

-43.0975 (26, 31, 0) 117.683 (49, 32, 0) 4.44953e-07 22.9822 0.287278

Min Max Mean SD SE

-44.9091 (37, 36, 0) 26.5736 (28, 28, 0) -2.71914e-08 8.97143 0.112143

case: CTF Correction at single

Min Max Mean SD SE

-33.0969 (49, 51, 0) 73.3827 (35, 37, 0) -1.68364e-08 15.1195 0.188993

Case: Options only essential

Min Max Mean SD SE

-40.2801 (48, 52, 0) 104.151 (36, 38, 0) 1.24049e-07 18.8015 0.235019

Min Max Mean SD SE

7.30857e-06 (75, 37, 0) 378.143 (42, 0, 0) 4.45621 19.8824 0.24853

Option -W

Case: W=1

Min Max Mean SD SE

-17.0714 (27, 31, 0) 23.2441 (40, 52, 0) 5.81327e-09 4.65713 0.0582141

Min Max Mean SD SE

3.22907e-07 (0, 0, 0) 62.9461 (46, 78, 0) 1.28884 4.68843 0.0586053

Option -WR

Case: WR=10.0, W=0.5

Min Max Mean SD SE

-11.5567 (27, 31, 0) 15.7516 (24, 39, 0) 1.23206e-08 3.24282 0.0405352

Min Max Mean SD SE

2.72506e-08 (75, 37, 0) 45.7637 (46, 78, 0) 0.700623 3.33709 0.0417136

Option -SinWin

Case: SinWin=(0.05, 0.2)

Min Max Mean SD SE

-39.9332 (48, 52, 0) 102.315 (36, 38, 0) 1.52273e-07 18.7407 0.234259

Min Max Mean SD SE

0 (40, 1, 0) 378.143 (42, 0, 0) 4.1815 19.8843 0.248553

Option -ctfMode

Case: ctfMode=32

Min Max Mean SD SE

-24.2681 (68, 48, 0) 207.103 (36, 38, 0) -1.0943e-09 45.5848 0.56981

Min Max Mean SD SE

0 (0, 0, 0) 1280.12 (41, 0, 0) 6.47008 51.7633 0.647041

Case: ctfMode=256

Min Max Mean SD SE

-191.228 (36, 38, 0) 26.7763 (67, 30, 0) -3.91243e-08 45.3127 0.566409

Min Max Mean SD SE

0 (0, 0, 0) 1280.12 (41, 0, 0) 5.38217 51.6411 0.645514

Case: ctfMode=257

Min Max Mean SD SE

-90.5402 (36, 37, 0) 39.3153 (49, 51, 0) -1.30477e-07 18.1267 0.226584

Min Max Mean SD SE

1.17451e-06 (75, 37, 0) 378.143 (42, 0, 0) 3.33762 19.4523 0.243154

Option -m

Case: m=1, W=1

Case: No other settings

Min Max Mean SD SE

-9.82557 (48, 51, 0) 92.1757 (49, 32, 0) 6.14297 14.8838 0.186048

Min Max Mean SD SE

0.00108315 (40, 41, 0) 491.438 (0, 0, 0) 4.1562 18.0735 0.225919

iter          0 : rms    1.013455e+01 : min    1.000000e+06
iter          1 : rms    1.355871e+00 : min    1.013455e+01
iter          2 : rms    8.647722e-01 : min    1.355871e+00
iter          3 : rms    6.229646e-01 : min    8.647722e-01
iter          4 : rms    4.844930e-01 : min    6.229646e-01
iter          5 : rms    3.971868e-01 : min    4.844930e-01
iter          6 : rms    3.377429e-01 : min    3.971868e-01
iter          7 : rms    2.951728e-01 : min    3.377429e-01
iter          8 : rms    2.629044e-01 : min    2.951728e-01
iter          9 : rms    2.370113e-01 : min    2.629044e-01

Case: solventMode=1

Min Max Mean SD SE

-20.1029 (48, 51, 0) 87.1488 (49, 32, 0) 2.38926 14.7396 0.184245

Min Max Mean SD SE

0.00627302 (76, 14, 0 222.088 (42, 0, 0) 4.12707 15.7098 0.196372

iter          0 : rms    3.709238e+01 : min    1.000000e+06
iter          1 : rms    3.539059e+00 : min    3.709238e+01
iter          2 : rms    1.971014e+00 : min    3.539059e+00
iter          3 : rms    1.314187e+00 : min    1.971014e+00
iter          4 : rms    9.704149e-01 : min    1.314187e+00
iter          5 : rms    7.649823e-01 : min    9.704149e-01
iter          6 : rms    6.304888e-01 : min    7.649823e-01
iter          7 : rms    5.362647e-01 : min    6.304888e-01
iter          8 : rms    4.668152e-01 : min    5.362647e-01
iter          9 : rms    4.135905e-01 : min    4.668152e-01

Case: solventSTD=2.0, solventMode=1

Min Max Mean SD SE

85.3666 (27, 31, 0) 146.065 (58, 33, 0) 101.654 5.9911 0.0748887

Min Max Mean SD SE

0.00707058 (78, 44, 0) 8132.32 (0, 0, 0) 4.62714 143.824 1.7978

iter          0 : rms    1.424218e+00 : min    1.000000e+06
iter          1 : rms    2.156973e-01 : min    1.424218e+00
iter          2 : rms    1.394271e-01 : min    2.156973e-01
iter          3 : rms    1.043566e-01 : min    1.394271e-01
iter          4 : rms    8.473523e-02 : min    1.043566e-01
iter          5 : rms    7.243526e-02 : min    8.473523e-02
iter          6 : rms    6.412249e-02 : min    7.243526e-02
iter          7 : rms    5.819677e-02 : min    6.412249e-02
iter          8 : rms    5.380184e-02 : min    5.819677e-02
iter          9 : rms    5.044070e-02 : min    5.380184e-02

Case: MaxIter=5, solventSTD=2.0, solventMode=1

Min Max Mean SD SE

35.7164 (27, 31, 0) 94.8793 (58, 33, 0) 52.0534 5.94982 0.0743728

Min Max Mean SD SE

0.00307367 (71, 39, 0) 4164.28 (0, 0, 0) 3.33262 73.8045 0.922556

iter          0 : rms    1.424218e+00 : min    1.000000e+06
iter          1 : rms    2.156973e-01 : min    1.424218e+00
iter          2 : rms    1.394271e-01 : min    2.156973e-01
iter          3 : rms    1.043566e-01 : min    1.394271e-01
iter          4 : rms    8.473523e-02 : min    1.043566e-01

Case: m=16

Min Max Mean SD SE

-90.5402 (36, 37, 0) 39.3153 (49, 51, 0) -1.13944e-07 18.1267 0.226584

Min Max Mean SD SE

1.17451e-06 (75, 37, 0) 378.143 (42, 0, 0) 3.33762 19.4523 0.243154

Case: m=17

Min Max Mean SD SE

-363.432 (24, 39, 0) 64206.9 (50, 53, 0) 12232.5 12224.9 152.812

Min Max Mean SD SE

0.000769818 (62, 30, 0) 978599 (0, 0, 0) 2152.97 21751 271.888

iter          0 : rms    2.228456e+00 : min    1.000000e+06
iter          1 : rms    1.072463e+00 : min    2.228456e+00
iter          2 : rms    8.595473e-01 : min    1.072463e+00
iter          3 : rms    7.822678e-01 : min    8.595473e-01
iter          4 : rms    7.485957e-01 : min    7.822678e-01
iter          5 : rms    7.339871e-01 : min    7.485957e-01
iter          6 : rms    7.188863e-01 : min    7.339871e-01
iter          7 : rms    7.127621e-01 : min    7.188863e-01
iter          8 : rms    7.096454e-01 : min    7.127621e-01
iter          9 : rms    7.069848e-01 : min    7.096454e-01