Difference between revisions of "mrcImagePad"

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(Created page with "'''mrcImagePad''' is Eos's Command that performs padding. == List of option == === Main option === <table border="1"> <div align="left"> <tr> <th>Option</th>...")
 
(→‎------Option -m------)
 
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</tr>
 
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<tr><td>Case: m=1</td></tr>
 
<tr><td>Case: m=1</td></tr>
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<tr>
 
 
<tr><td>Input</td></tr>
 
<tr><td>Input</td></tr>
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<tr>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td><p align="left">Min<br>
 
<td><p align="left">Min<br>
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0.000645489<br></p>
 
0.000645489<br></p>
 
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</td>
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<tr><td>Input</td></tr>
 
 
<tr><td>Case: m=2</td></tr>
 
<tr><td>Case: m=2</td></tr>
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<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
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</td>
 
</td>
 
</tr>
 
</tr>
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<tr><td>Input</td></tr>
 
 
<tr><td>Case: m=3</td></tr>
 
<tr><td>Case: m=3</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=4</td></tr>
 
<tr><td>Case: m=4</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:B120.pad-mrcImagePad.png]]</td>
 
<td>[[File:B120.pad-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=5</td></tr>
 
<tr><td>Case: m=5</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=6</td></tr>
 
<tr><td>Case: m=6</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
 
<td>[[File:Firament-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=7</td></tr>
 
<tr><td>Case: m=7</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=8</td></tr>
 
<tr><td>Case: m=8</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=9</td></tr>
 
<tr><td>Case: m=9</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=10</td></tr>
 
<tr><td>Case: m=10</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=11</td></tr>
 
<tr><td>Case: m=11</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=12</td></tr>
 
<tr><td>Case: m=12</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=13</td></tr>
 
<tr><td>Case: m=13</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=14</td></tr>
 
<tr><td>Case: m=14</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
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</tr>
 
</tr>
 
<tr><td>Case: m=15</td></tr>
 
<tr><td>Case: m=15</td></tr>
 +
<tr><td>Input</td></tr>
 
<tr>
 
<tr>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>
 
<td>[[File:Test.noise-mrcImagePad.png]]</td>

Latest revision as of 05:10, 10 October 2014

mrcImagePad is Eos's Command that performs padding.

List of option

Main option

Option Essential/Optional Description Default
-i Essential Input: mrcImage NULL
-o Essential Output: mrcImage NULL
-W Optional Width[pixel] 0
-H Optional Height[pixel] 0
-V Optional Padding Value(float on avgrage density) 0.0
-EV Optional Expected Value for Background/td> 0.0
-AW Optional Averaging Window Size [A] 2000.0
-AWMin Optional Averaging Window Size Min[pixel] 20
-AWMax Optional Averaging Window Size Max[pixel] 22
-Tilt Optional TiltImage: (TiltAxisAngle, TiltAngle) 0,0
-m Optional Mode 0
-h Optional Help 0

-m details

Value Description
0 Pad average density(Image Center)
1 Pad average density of x=0 and x=MAX(x)(Image Center)
2 Pad dynamic average density of x=0 and x=MAX(x)(Image Center)
3 Pad average density of x=0,MAX(x) and y=0,MAX(y), (Image Center)
4 Pad average density of bottom left
5 Pad value (Image Center)
6 Pad value of bottom left
7 Pad value estimated from outside circle
8 Pad value estimated from outside ring: -AWMin -AMax
9 Pad value is Value
10 Periphery Masking Using ExpectedValue
11 Normalized Padding using (I(x,y)-avg(bg))/avg(bg))
12 Normalized Padding using (I(x,y)-avg(I))/sqrt(var(I)))
13 Normalized Padding using (I(x,y)-avg(bg))/sqrt(var(bg)))
14 Normalized Padding using (I(x,y)-avg(bg))/(avg(I)-avg(bg))
15 Tilted Image Circle Average: Need two values of TiltAxisAngle TiltAngle


Execution example

------Option -m------

Case: m=0
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

0.856332
0.331084
0.0903754

0.00177241

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.w80h80-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.166647

0.525248
4.04907e-05
0.0504441

0.000630551
Case: m=1
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

0.856332
0.331084
0.0903754

0.00177241

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.m1w80h80-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.142948

0.548947
0.00744655
0.0516391

0.000645489
Case: m=2
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

0.856332
0.331084
0.0903754

0.00177241

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.m2w80h80-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.137842

0.550977
0.0074793
0.0513355

0.000641694

Case: -AW 100

　　－－－－－－＞		 Pad.m2w80h80aw100-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.177415

0.563255
0.00805666
0.0522009

0.000652512
Case: m=3
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

0.856332
0.331084
0.0903754

0.00177241

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.m3w80h80-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.151435

0.54046
0.00479425
0.0509428

0.000636785
Case: m=4
Input
B120.pad-mrcImagePad.png

Min

Max
Mean
SD

SE

-65.0178

94.4699
4.85274
20.4635

0.255794

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 B120.m4w100h100-mrcImagePad.png

Min

Max
Mean
SD

SE

-69.8706

89.6171
-5.28336e-08
16.3708

0.163708
Case: m=5
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.151435

0.54046
0.00479425
0.0509428

0.000636785

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.m5w80h80-mrcImagePad.png

Min

Max
Mean
SD

SE

0

0.856332
0.103504
0.161597

0.00201996

Case: -V 1

　　－－－－－－＞		 Pad.m5w80h80v1-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

1
0.791004
0.314068

0.00392585
Case: m=6
Input
Firament-mrcImagePad.png

Min

Max
Mean
SD

SE

-0.151435

0.54046
0.00479425
0.0509428

0.000636785

 Output

Case: -W 80,-H 80

　　－－－－－－＞		 Pad.m6w80h80v0-mrcImagePad.png

Min

Max
Mean
SD

SE

0

0.856332
0.101998
0.159322

0.00199153

Case: -V 1

　　－－－－－－＞		 Pad.m6w80h80v1-mrcImagePad.png

Min

Max
Mean
SD

SE

0.164437

1
0.789498
0.316196

0.00395246
Case: m=7
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output
　　－－－－－－＞		 Pad.m7.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-52.9982

101.923
5.5193
18.1424

0.22678
Case: m=8
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100
-AWMin 20,-AWMax 30

　　－－－－－－＞		 Pad.m8w100h100mi20ma30-mrcImagePad.png

Min

Max
Mean
SD

SE

-45.1007

99.7399
2.77838
10.7886

0.107886
Case: m=9
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m9w100h100.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
3.4893
15.8828

0.158828
Case: m=10
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m10w100h100.b120-mrcImagePad.png

Min

Max
Mean
SD

SE

-1.31576

35.2476
0.439553
2.76567

0.0276567

Case: -V 1

　　－－－－－－＞		 Pad.m10w100h100ev1.b120-mrcImagePad.png

Min

Max
Mean
SD

SE

0

64.5929
1.43143
7.79087

0.0779087
Case: m=11
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m11w100h100.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-62.2413

116.548
3.3869
18.2569

0.182569
Case: m=12
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m12w100h100.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-2.98831

4.92302
-2.51009e-10
0.8

0.008
Case: m=13
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m13w100h100.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-3.46173

6.48217
0.188372
1.01541

0.0101541
Case: m=14
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100

　　－－－－－－＞		 Pad.m14w100h100.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-55.6403

104.188
3.0277
16.3206

0.163206
Case: m=15
Input
Test.noise-mrcImagePad.png

Min

Max
Mean
SD

SE

-53.0655

101.855
5.45203
19.5821

0.244776

 Output

Case: -W 100,-H 100
-Tilt 30,30

　　－－－－－－＞		 Pad.m15W100H100t3030-mrcImagePad.png

Min

Max
Mean
SD

SE

-48.0036

101.882
3.51487
14.2277

0.142277

Case: -W 100,-H 100
-Tilt 120,120

　　－－－－－－＞		 Pad.m15W100H100t120120-mrcImagePad.png

Min

Max
Mean
SD

SE

-47.3067

101.973
3.4676
12.6731

0.126731
Retrieved from "http://www.yasunaga-lab.bio.kyutech.ac.jp/Eos/index.php?title=mrcImagePad&oldid=4504"