pdb2mrc2d

pdb2mrc2d Eos's Command that converts from PDB file to mrcImage file.

List of option

Main option

Option	Essential/Optional	Description	Default
-i	Essential	Input: PDB	NULL
-o	Optional	Output: mrcImage(2D)	NULL
-O	Optional	Output: mrcImage(3D)	NULL
-d	Essential	Width per 1pixel	5.0 5.0
-s	Optional	Position of image	0.0 0.0
-n	Essential	Size of image	0 0
-Rot	Optional	Rotaiton (x-axis, y-axis)	1 1
-S	Optional	Rotation (order z-axis -> x-axis -> y-axis)	0.0 0.0 0.0
-startEA	Optional	Euler Angle	YOYS 0.0 0.0 0.0
-EAMode	Optional	RotationMode	YOYS
-EARot1	Optional	FirstRotation	5.0 0.0 180.0
-EARot2	Optional	SecondRotation	5.0 0.0 180.0
-w	Optional	Weight	1.0
-sig	Optional	Atom Radius: [A]	0.0
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0	Mercatol/equal angle
1	Morwide/equal angle
2	Mercatol/equal area
3	Morwide/equal area

If both of -s and -startEA, first -s and second -startEA will be performed.
*If you require axis at center, check by pdbInfo, and execute pdbMove with Inverting + and -.

RotMode's details

1st:	1st rotation axis
2nd:	Setting1 of rotation order
	O…Rotation Order: Z→Y→X E…Rotation Order: Z→X→Y
3rd:	Setting2 of rotation order
	Y…keep the order N…reverse the order
4th:	Setting of rotation method
	Y…rotate object directly D…rotate at coordinates