Command

Command is thing running the instruction of the computer on Eos. Eosis operated by Character User Interface(CUI) basically.

Example of executing the Command on Eos

Eos's Command is used by standard input (from keyboard) to CUI.

$ Display2 -i MicroscopeImage.roi

The above command Display2 has the ability to display the image as mrcImage, roi ... . In addition it can perform cut out the Particles. Eos's Command can check help of option by using option -h.

$ Display2 -h

The following is example of help at Display2.

Usage: /home/people/keita1023/Eos/bin/X86LINUX64/Display2
Options:
   [-i[nput]            In                  (NULL      )] :Optional  :InputDataFile
   [-t[epmlate]         Template            (85.roi    )] :Optional  :Template for InputFile 
   [-H[ighForThres]     ThresHigh           (0.0       )] :Optional  :Template for InputFile 
   [-L[owForThres]      ThresLow            (0.0       )] :Optional  :Template for InputFile 
   [-Zoom               Zoom                (1.0       )] :Optional  :Zoom for InputFile 
   [-Inverse            ] :Optional  :Inverse (HighValue(dark)<->LowValue(bright)) for InputFile 
   [-o[utput]           Out                 (.EosLog   )] :Optional  :OutputLogFile
   [-display            geometry            (:0.0      )] :Optional  :OutputLogFile
   [-geometry           display             (1024x1024+0+0)] :Optional  :OutputLogFile
   [-c[onfig]           configFile          (NULL      )] :Optional  :ConfigurationFile
   [-m[ode]             mode                (0         )] :Optional  :Mode
New wish commands of Display2
mrcInfoSet [z|min|max] value
mrcInfoSet [log|pow] 
mrcInfoGet [Nx|Ny|Nz|Max|Min|Mean|Hist]

There are about 400 commands (List of command, Functional order of Eos command list) of Eos in 2012, and you can perform many image processing by these commands.