「mrcImageOrientationSearch」の版間の差分
提供: Eospedia
(→オプション一覧) |
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| (同じ利用者による、間の4版が非表示) | |||
| 行14: | 行14: | ||
<td>-I1</td> | <td>-I1</td> | ||
<td>必須</td> | <td>必須</td> | ||
| − | <td>入力ファイル1設定: | + | <td>入力ファイル1設定: [[ASCII]](ファイルリスト)</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
| 行20: | 行20: | ||
<td>-I2</td> | <td>-I2</td> | ||
<td>必須</td> | <td>必須</td> | ||
| − | <td>入力ファイル2設定: | + | <td>入力ファイル2設定: [[ASCII]](ファイルリスト)</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
| 行26: | 行26: | ||
<td>-o</td> | <td>-o</td> | ||
<td>必須</td> | <td>必須</td> | ||
| − | <td>出力ファイル設定: | + | <td>出力ファイル設定: 未実装</td> |
<td>NULL</td> | <td>NULL</td> | ||
</tr> | </tr> | ||
| 行32: | 行32: | ||
<td>-T</td> | <td>-T</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td>閾値</td> | + | <td>閾値: 未実装</td> |
<td>0</td> | <td>0</td> | ||
</tr> | </tr> | ||
| 行54: | 行54: | ||
</tr> | </tr> | ||
</table> | </table> | ||
| + | <br> | ||
===モードの詳細=== | ===モードの詳細=== | ||
| 行67: | 行68: | ||
<tr> | <tr> | ||
<td>1</td> | <td>1</td> | ||
| − | <td>There is correlation file name in input file (common line position is determined Max correlation)</td> | + | <td>There is correlation file name in input file (common line position is determined Max correlation): 未実装</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>2</td> | <td>2</td> | ||
| − | <td> There is correlation file name in input file (common line position is determined Threshold), -T</td> | + | <td> There is correlation file name in input file (common line position is determined Threshold), -T: 未実装</td> |
</tr> | </tr> | ||
</table> | </table> | ||
| + | <br> | ||
| − | === | + | ===-i1のフォーマット=== |
====m=0 の場合==== | ====m=0 の場合==== | ||
<pre> | <pre> | ||
| − | filename1 filename2 commonlineposition1 commonlineposition2 commonlinepositionMode | + | XXXX filename1 filename2 commonlineposition1 commonlineposition2 commonlinepositionMode |
| − | + | . . . . . . | |
| − | + | . . . . . . | |
| − | + | . . . . . . | |
| − | + | . . . . . . | |
</pre> | </pre> | ||
| + | <div>1列目のデータXXXXは使用しない<br> | ||
| + | commonlinepositionMode: 1 or z-rotation</div> | ||
| + | <br> | ||
====m=1, 2 の場合==== | ====m=1, 2 の場合==== | ||
| 行93: | 行98: | ||
. . . | . . . | ||
</pre> | </pre> | ||
| + | <br> | ||
| − | === | + | ===-i2 のフォーマット=== |
<pre> | <pre> | ||
filename | filename | ||
| 行102: | 行108: | ||
. | . | ||
</pre> | </pre> | ||
| + | <br> | ||
== 実行例 == | == 実行例 == | ||
| + | ===-i1 のデータ=== | ||
| + | <pre> | ||
| + | 1 /Eos/img/Input0.mrc /Eos/img/Input1.mrc 275.77 152.88 1 | ||
| + | 2 /Eos/img/Input0.mrc /Eos/img/Input2.mrc 355.67 239.91 1 | ||
| + | 3 /Eos/img/Input0.mrc /Eos/img/Input3.mrc 80.08 158.58 1 | ||
| + | 4 /Eos/img/Input0.mrc /Eos/img/Input4.mrc 0.00 0.00 z-rotation | ||
| + | 5 /Eos/img/Input1.mrc /Eos/img/Input2.mrc 240.00 300.00 1 | ||
| + | 6 /Eos/img/Input1.mrc /Eos/img/Input3.mrc 168.02 311.98 1 | ||
| + | 7 /Eos/img/Input1.mrc /Eos/img/Input4.mrc 332.88 95.77 1 | ||
| + | 8 /Eos/img/Input2.mrc /Eos/img/Input3.mrc 270.12 242.50 1 | ||
| + | 9 /Eos/img/Input2.mrc /Eos/img/Input4.mrc 59.91 175.67 1 | ||
| + | 10 /Eos/img/Input3.mrc /Eos/img/Input4.mrc 338.58 260.08 1 | ||
| + | |||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | ===-i2 のデータ=== | ||
| + | <pre> | ||
| + | /Eos/img/Input0.mrc | ||
| + | /Eos/img/Input1.mrc | ||
| + | /Eos/img/Input2.mrc | ||
| + | /Eos/img/Input3.mrc | ||
| + | /Eos/img/Input4.mrc | ||
| + | |||
| + | </pre> | ||
| + | <br> | ||
| + | |||
| + | ===オプション必須項目のみの場合=== | ||
| + | <div>出力結果</div> | ||
| + | <pre> | ||
| + | angle[0] = 4.813094 >> cosine = 0.100535 sine = -0.994933 | ||
| + | angle[1] = 2.668259 >> cosine = -0.890054 sine = 0.455856 | ||
| + | angle[2] = 6.207613 >> cosine = 0.997146 sine = -0.075501 | ||
| + | angle[3] = 4.187219 >> cosine = -0.501360 sine = -0.865239 | ||
| + | angle[4] = 4.188790 >> cosine = -0.500000 sine = -0.866025 | ||
| + | angle[5] = 5.235988 >> cosine = 0.500000 sine = -0.866025 | ||
| + | cosineXr1 = 0.349082 cosineXr2 = -0.224265 | ||
| + | ratio = -0.961585 | ||
| + | Xrotation1 = 1.214205 Xrotation2 = 1.796985 | ||
| + | |||
| + | filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000) | ||
| + | filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 69.568827) | ||
| + | filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 102.959645) | ||
| + | |||
| + | filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000) | ||
| + | filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 290.431173) | ||
| + | filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 257.040355) | ||
| + | </pre> | ||
| + | <br> | ||
2015年3月24日 (火) 00:24時点における最新版
mrcImageOrientationSearchとはEosのコマンドである。
目次
オプション一覧
メインオプション
| オプション | 必須項目/選択項目 | 説明 | デフォルト |
|---|---|---|---|
| -I1 | 必須 | 入力ファイル1設定: ASCII(ファイルリスト) | NULL |
| -I2 | 必須 | 入力ファイル2設定: ASCII(ファイルリスト) | NULL |
| -o | 必須 | 出力ファイル設定: 未実装 | NULL |
| -T | 選択 | 閾値: 未実装 | 0 |
| -c | 選択 | コンフィグファイル設定 | NULL |
| -m | 選択 | モードを設定 | 0 |
| -h | 選択 | ヘルプを表示 |
モードの詳細
| モード | 説明 |
|---|---|
| 0 | There is one common line position in input file (using Test) |
| 1 | There is correlation file name in input file (common line position is determined Max correlation): 未実装 |
| 2 | There is correlation file name in input file (common line position is determined Threshold), -T: 未実装 |
-i1のフォーマット
m=0 の場合
XXXX filename1 filename2 commonlineposition1 commonlineposition2 commonlinepositionMode
. . . . . .
. . . . . .
. . . . . .
. . . . . .
1列目のデータXXXXは使用しない
commonlinepositionMode: 1 or z-rotation
commonlinepositionMode: 1 or z-rotation
m=1, 2 の場合
correlationfilename filename1 filename2
. . .
. . .
. . .
. . .
-i2 のフォーマット
filename
.
.
.
.
実行例
-i1 のデータ
1 /Eos/img/Input0.mrc /Eos/img/Input1.mrc 275.77 152.88 1 2 /Eos/img/Input0.mrc /Eos/img/Input2.mrc 355.67 239.91 1 3 /Eos/img/Input0.mrc /Eos/img/Input3.mrc 80.08 158.58 1 4 /Eos/img/Input0.mrc /Eos/img/Input4.mrc 0.00 0.00 z-rotation 5 /Eos/img/Input1.mrc /Eos/img/Input2.mrc 240.00 300.00 1 6 /Eos/img/Input1.mrc /Eos/img/Input3.mrc 168.02 311.98 1 7 /Eos/img/Input1.mrc /Eos/img/Input4.mrc 332.88 95.77 1 8 /Eos/img/Input2.mrc /Eos/img/Input3.mrc 270.12 242.50 1 9 /Eos/img/Input2.mrc /Eos/img/Input4.mrc 59.91 175.67 1 10 /Eos/img/Input3.mrc /Eos/img/Input4.mrc 338.58 260.08 1
-i2 のデータ
/Eos/img/Input0.mrc /Eos/img/Input1.mrc /Eos/img/Input2.mrc /Eos/img/Input3.mrc /Eos/img/Input4.mrc
オプション必須項目のみの場合
出力結果
angle[0] = 4.813094 >> cosine = 0.100535 sine = -0.994933 angle[1] = 2.668259 >> cosine = -0.890054 sine = 0.455856 angle[2] = 6.207613 >> cosine = 0.997146 sine = -0.075501 angle[3] = 4.187219 >> cosine = -0.501360 sine = -0.865239 angle[4] = 4.188790 >> cosine = -0.500000 sine = -0.866025 angle[5] = 5.235988 >> cosine = 0.500000 sine = -0.866025 cosineXr1 = 0.349082 cosineXr2 = -0.224265 ratio = -0.961585 Xrotation1 = 1.214205 Xrotation2 = 1.796985 filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000) filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 69.568827) filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 102.959645) filename : /Eos/img/Input0.mrc >>> ZENR (0.000000, 0.000000, 0.000000) filename : /Eos/img/Input1.mrc >>> ZENR (152.880000, 275.770000, 290.431173) filename : /Eos/img/Input2.mrc >>> ZENR (239.910000, 355.670000, 257.040355)
