mrcFETnormalizeBySD
From EosPedia
mrcFETnormalizeBySD is Eos's Command.
Contents
List of option
Main option
| Option | Essential/Optional | Description | Default |
|---|---|---|---|
| -i | Essential | Input: ASCII(file list) | NULL |
| -is | Optional | Input: (for SDcalc) (file list) | NULL |
| -o | Optional | Output: mrcImage | NULL |
| -rSD | Optional | Reading FETSDfile: mrcImage | NULL |
| -wSD | Optional | Writing FETSDfile: mrcImage | NULL |
| -c | Optional | ConfigurationFile | NULL |
| -m | Optional | Mode | 0 |
| -h | Optional | Help |
-is :[inputsample] is FileList for SDcalculation.
use when the inputFileList is large
-rSD : to use SDdata(without calculate) mrc format
-wSD : write out the SDdata as mrc format
this file can be used next normalize with "-rSD"command.
-o : save all normalized data into one mrcImage.
do not use when the inputFileList is large
-m details
| Value | Description |
|---|---|
| 0 |
-i format
FET file1 FET file2 . .
-wSD format
The output of mrcImage in the following format:
average of width average of skewness average of kurtosis SD of width SD of skewness SD of kurtosis
Execution example
Input file
-i data
Input-1VOM-2D-FET.radon Input-1VOM-Rot-2D-FET.radon Input-1VOM-Rot3-2D-FET.radon
Data for Input-1VOM-2D-FET.radon file by mrcImageMakeDump.
0.0533889 0.309261 2.42345
0.0535469 0.316717 2.42278
0.0537852 0.328374 2.42103
0.054231 0.323276 2.40269
0.0542998 0.329251 2.40747
...
0.0524661 -0.297861 2.44797
0.0529934 -0.293378 2.42465
0.0531624 -0.301725 2.42459
0.0533889 -0.309261 2.42345
0.0535469 -0.316717 2.42278
...
0.052111 0.276049 2.44385
0.0523056 0.288111 2.44664
0.0524661 0.297861 2.44797
0.0529934 0.293378 2.42465
0.0531625 0.301725 2.42459
Data for Input-1VOM-Rot-2D-FET.radon by mrcImageMakeDump.
0.0296636 -0.0427556 1.98361
0.0295906 -0.0384619 1.97451
0.0294273 -0.0328908 1.96459
0.0293268 -0.0282282 1.95575
0.0292469 -0.0232475 1.94798
...
0.0301512 0.0511498 2.02086
0.0300728 0.0476488 2.01232
0.0300809 0.0480092 1.99483
0.0299709 0.0427557 1.98361
0.0298862 0.038462 1.97451
...
0.0304165 -0.0592456 2.04089
0.0301904 -0.0554404 2.03163
0.0299399 -0.0511498 2.02086
0.0298144 -0.0476488 2.01232
0.0297851 -0.0480091 1.99483
Data for Input-1VOM-Rot3-2D-FET.radon by mrcImageMakeDump.
0.0553769 0.289028 2.36296
0.0546224 0.299151 2.37506
0.0541597 0.296936 2.36456
0.0537064 0.294374 2.35207
0.0532336 0.291347 2.34144
...
0.0562323 -0.273584 2.39666
0.0559653 -0.274274 2.3896
0.0554794 -0.276069 2.38097
0.0553769 -0.289028 2.36296
0.0546224 -0.299152 2.37506
...
0.0567532 0.269964 2.41348
0.0565171 0.272261 2.40528
0.0562323 0.273584 2.39666
0.0559653 0.274274 2.3896
0.0554794 0.276069 2.38097
Example of options only essential
Output
0.046142 0.011605 0.176595 0.159164 2.266799 0.193134
Option -o, -wSD
Data for -o file by mrcImageMakeDump
0.80458 0.624979 0.591161
-1.40951 -1.41115 -1.40819
0.604928 0.786169 0.817027
Data for -wSD file by mrcImageMakeDump
0.0116049 0.159164 0.193134
0.0461423 0.176595 2.2668
