mrcImageAbnormalValueRemove

mrcImageAbnormalValueRemove is Eos's Command that removes the outliers in the electron micrographs. The outliers in the electron micrographs in the case of many is due to individual difference of elements of CCD camera, Ice of Crystallization. It is possible to reduce adverse effects on the Image Processing (e.g. CTF Correction) using this Command.

List of option

Main option

Option	Essential/Optional	NULL	Default
-i	Essential	Input: mrcImage	NULL
-o	Essential	Output: mrcImage	NULL
-v	Optional		3.0
-u	Optional		UnsignedMax(65535) UnsignedHalf(16384)
-m	Optional	Mode	0
-h	Optional	Help

-m details

Value	Description
0	Random Value
1	Near Value
2	Random Value using SD and mean within Normal Area
3	Mean Value using SD and mean within Normal Area

Execution example

Input file's image

Min Max Mean SD SE

-65.0178 94.4699 4.85274 20.4635 0.255794

Example of options only essential

Min Max Mean SD SE

-56.108 66.0024 4.49193 19.7521 0.246901

Option -v

Case: v=1

Min Max Mean SD SE

-62.7258 74.644 4.1715 14.3336 0.17917

Case: v=5

Min Max Mean SD SE

-65.0178 94.4699 4.85274 20.4635 0.255794

Option -mode

Case: mode=0

Min Max Mean SD SE

-56.108 66.0024 4.49193 19.7521 0.246901

Case: mode=1

Min Max Mean SD SE

-56.108 66.0024 4.6678 19.8468 0.248085