energyTransferModelCheck
提供: Eospedia
energyTransferModelCheckとはEosのコマンドである。
オプション一覧
メインオプション
オプション | 必須項目/選択項目 | 説明 | デフォルト |
---|---|---|---|
-i | 必須 | 入力ファイル | NULL |
-o | 必須 | 出力ファイル | NULL |
-p | 選択 | Excluded Area by PDB: Input[PDB] | NULL |
-P | 選択 | Excluded Area by PDB: Input[PDBFileList] | NULL |
-PW | 選択 | PDBFileList With Info: filename sigma[A] | |
-sigma | 選択 | SigmaOfAtom for All: sigma [pixel]x delta[A/pixel] | 1.0 |
-sigmaA | 選択 | SigmaOfAtom for All: sigma [A] | 1.0 |
-mrc | 選択 | Excluded Area by mrc: Input[MRC] | NULL |
-MRC | 選択 | Excluded Area by MRC: Input[MRCFileList] | NULL |
-MRCW | 選択 | MRCFileList with Info: filename contour near[A] | |
-C | 選択 | ContourLevel for Exclusion: Density<ContourLevel -> 0 | 10. |
-Near | 選択 | Near [pixel]: Exclusion Area: near[pixel] x delta [A/pixel] | 1. |
-NearA | 選択 | Near [A]: Exclusion Area: near [A] | 1. |
-r | 選択 | Restricted Area: Input[mrc] | NULL |
-R | 選択 | Restricted Area: InputDataFileList[mrcs] | NULL |
-contour | 選択 | ContourLevel for Restriction | 10. |
-near | 選択 | Near [pixel]: Restriction Area: near[pixel] x delta [A/pixel] | 1. |
-nearA | 選択 | Near [A]: Restriction Area: near[A] | 1. |
-R | 選択 | WithInfo: filename contour near[A] | |
-rP | 選択 | Restricted Area: InputDataFile[pdb] | NULL |
-RP | 選択 | Restricted Area: InputDataFileList[pdbs]: format: filename near[pixel] | NULL |
-sigmaP | 選択 | Sigma[pixel]: Restriction Area: sigma x delta [A] | 1. |
-sigmaPA | 選択 | Sigma[A]: Restriction Area: sigma [A] | 1. |
-nearP | 選択 | Near [pixel]: Restriction Area: near x delta [A] | 1. |
-nearPA | 選択 | Near [A]: Restriction Area: near [A] | 1. |
-RPW | 選択 | WithInfo: filename near[A] sigma[A] | |
-delta | 選択 | delta[A]: (x, y, z) | (5, 5, 5) |
-sdelta | 選択 | starting delta[A]: (x, y, z) | (5, 5, 5) |
-start | 選択 | start[A]: (x, y, z) | (5, 5, 5) |
-end | 選択 | end[A]: (x, y, z) | (5, 5, 5) |
-maxIter | 選択 | Max Iteration | 1 |
-startIter | 選択 | Start Iteration | 0 |
-neglect | 選択 | neglect: probability for each term: not final probability | 1e-4 |
-c | 選択 | コンフィグファイル設定 | NULL |
-m | 選択 | モードを設定 | 0 |
-h | 選択 | ヘルプを表示 |
----- Point Information : Each ID has no space character. ----- ID fix x y z rootB radius(noUse) ...... ID unfix x y z rootB radius ...... ID connect ID length rootB ......
モードの詳細
モード | 説明 |
---|---|
0 |