「defocusDeterminationFromThonRing」の版間の差分
提供: Eospedia
(ページの作成:「'''defocusDeterminationFromThonRing'''とはEosのコマンドである。 == オプション一覧 == ===メインオプション=== <table border="1"> <t...」) |
(→メインオプション) |
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| (同じ利用者による、間の8版が非表示) | |||
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<td>-iR</td> | <td>-iR</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td>InputReferenceForLength</td> | + | <td>InputReferenceForLength: [[mrcImage]]</td> |
<td>stdin</td> | <td>stdin</td> | ||
</tr> | </tr> | ||
| 行32: | 行32: | ||
<td>-o</td> | <td>-o</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td>出力ファイル設定</td> | + | <td>出力ファイル設定: [[ASCII]]</td> |
<td>stdout</td> | <td>stdout</td> | ||
</tr> | </tr> | ||
| 行38: | 行38: | ||
<td>-oI</td> | <td>-oI</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td>OutputInformationFile1</td> | + | <td>OutputInformationFile1: [[ASCII]](mrcImageMultiCTFCompensation and mrcImageCTFCompensation)</td> |
<td>stdout</td> | <td>stdout</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>- | + | <td>-oI2</td> |
<td>選択</td> | <td>選択</td> | ||
| − | <td>OutputInformationFile2</td> | + | <td>OutputInformationFile2: [[ASCII]](llDataCTFCompensate -I2)</td> |
<td>stdout</td> | <td>stdout</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>- | + | <td>-oI3</td> |
<td>選択</td> | <td>選択</td> | ||
| − | <td>OutputInformationFile3</td> | + | <td>OutputInformationFile3: [[ASCII]](llExtractWithLayerSeparation)<br> |
| + | Options: -truePitch, -PixelSize, -deltadY and -ctfMode</td> | ||
<td>stdout</td> | <td>stdout</td> | ||
</tr> | </tr> | ||
| 行56: | 行57: | ||
<td>-kV</td> | <td>-kV</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td>kV</td> | + | <td>[[加速電圧]]: [kV]</td> |
<td>200</td> | <td>200</td> | ||
</tr> | </tr> | ||
| 行62: | 行63: | ||
<td>-Cs</td> | <td>-Cs</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td> | + | <td>[[球面収差係数]]: [mm]</td> |
<td>2.1</td> | <td>2.1</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>- | + | <td>-A</td> |
<td>選択</td> | <td>選択</td> | ||
<td>The ratio of amplitude contrast to phase contrast</td> | <td>The ratio of amplitude contrast to phase contrast</td> | ||
<td>0.05</td> | <td>0.05</td> | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-truePitch</td> | <td>-truePitch</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>True Pitch</td> |
| − | <td></td> | + | <td>430</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>-</td> | + | <td>-PixelSize</td> |
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>ピクセルサイズ [A]</td> |
| − | <td></td> | + | <td>5</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>-</td> | + | <td>-deltadY</td> |
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>A range of deltadY to determine dY.</td> |
| − | <td></td> | + | <td>0.5</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td>-</td> | + | <td>-R</td> |
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>[[可変入力]]: トーンリング: [/A]</td> |
| − | <td></td> | + | <td>NULL ...</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| 行111: | 行106: | ||
<td>選択</td> | <td>選択</td> | ||
<td>モードを設定</td> | <td>モードを設定</td> | ||
| + | <td>0</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>-ctfMode</td> | ||
| + | <td>選択</td> | ||
| + | <td>CTFMode</td> | ||
<td>0</td> | <td>0</td> | ||
</tr> | </tr> | ||
| 行119: | 行120: | ||
<td> </td> | <td> </td> | ||
</tr> | </tr> | ||
| − | </table> | + | </table> |
===モードの詳細=== | ===モードの詳細=== | ||
| 行130: | 行131: | ||
<td>0</td> | <td>0</td> | ||
<td></td> | <td></td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | ===CTFModeの詳細=== | ||
| + | <table border="1"> | ||
| + | <tr> | ||
| + | <th>モード</th> | ||
| + | <th>説明</th> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>0</td> | ||
| + | <td>Phase CTF </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>1</td> | <td>1</td> | ||
| − | <td></td> | + | <td>PhaseCTF + ratio*AmpCTF </td> |
</tr> | </tr> | ||
</table> | </table> | ||
| 行139: | 行152: | ||
== 実行例 == | == 実行例 == | ||
| + | ===オプション必須項目のみの場合=== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | --------------------------------------------- | ||
| + | Avg. nan [A] +- S.D. nan [A] | ||
| + | Avg. nan [um] +- S.D. nan [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | --------------------------------------------- | ||
| + | Avg. nan [A] +- S.D. nan [A] | ||
| + | Avg. nan [um] +- S.D. nan [um] | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | ===オプション -R=== | ||
| + | ====R=(0.001, 0.01, 0.1)で実行==== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196908e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196396e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | |||
| + | ===オプション -o, -oI, -oI2=== | ||
| + | ====o, oI, oI2をファイル指定, R=(0.001, 0.01, 0.1)で実行==== | ||
| + | <div>-o のデータ</div> | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196908e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196396e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | </pre> | ||
| + | |||
| + | <div>-oI のデータ</div> | ||
| + | <pre> | ||
| + | stdin 13352487.000000 2.100000 200.000000 0.050000 | ||
| + | </pre> | ||
| + | |||
| + | <div>-oI2 のデータ</div> | ||
| + | <pre> | ||
| + | 13352487.000000 2.100000 200.000000 0.050000 | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | ===オプション -iR=== | ||
| + | ====iRをファイル指定, R=(0.001, 0.01, 0.1)で実行==== | ||
| + | =====-iR の画像===== | ||
| + | <table> | ||
| + | <tr> | ||
| + | <td>[[画像:Refer-defocusDeterminationFromThonRing.png]]</td> | ||
| + | <td><p align="left">最小<br> | ||
| + | 最大<br> | ||
| + | 平均値<br> | ||
| + | 標準偏差<br> | ||
| + | 標準誤差<br></p> | ||
| + | </td> | ||
| + | <td><p align="left">0 (0, 0, 0)<br> | ||
| + | 255 (49, 32, 0)<br> | ||
| + | 21.0538<br> | ||
| + | 47.6709<br> | ||
| + | 0.595886<br></p> | ||
| + | </td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | |||
| + | =====-oI3をファイル指定で実行===== | ||
| + | <div>出力結果 </div> | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196908e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196396e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | LengthY 400.000000 [A] = LengthY 80 [Pixel] x PixelSize 5.000000 [A/Pixel] x Mag 1.000000 | ||
| + | Final CalculatedY 0.930233 | ||
| + | CalculatedY 1.000000 | ||
| + | deltadY 0.069767 | ||
| + | </pre> | ||
| + | |||
| + | <div>-oI3 のデータ </div> | ||
| + | <pre> | ||
| + | stdin 1 13352487.000000 2.100000 200.000000 0.050000 0 | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | =====truePitch=300で実行===== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196908e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196396e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | LengthY 400.000000 [A] = LengthY 80 [Pixel] x PixelSize 5.000000 [A/Pixel] x Mag 1.000000 | ||
| + | Final CalculatedY 1.333333 | ||
| + | CalculatedY 1.000000 | ||
| + | deltadY 0.333333 | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | =====PixelSize=10で実行===== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196908e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196396e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | LengthY 800.000000 [A] = LengthY 80 [Pixel] x PixelSize 10.000000 [A/Pixel] x Mag 1.000000 | ||
| + | Final CalculatedY 1.860465 | ||
| + | CalculatedY 2.000000 | ||
| + | deltadY 0.139535 | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | ===オプション -kV=== | ||
| + | ====kV=100, R=(0.001, 0.01, 0.1)で実行==== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 2.659654e+07 : 1.000000e-03 | ||
| + | 2 5.362301e+05 : 1.000000e-02 | ||
| + | 3 8.208672e+03 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 9.046993e+06 [A] +- S.D. 1.241128e+07 [A] | ||
| + | Avg. 904.70 [um] +- S.D. 1241.13 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -2.745611e+07 : 1.000000e-03 | ||
| + | -2 -5.448229e+05 : 1.000000e-02 | ||
| + | -3 -8.007123e+03 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -9.336313e+06 [A] +- S.D. 1.281450e+07 [A] | ||
| + | Avg. -933.63 [um] +- S.D. 1281.45 [um] | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | ===オプション -Cs=== | ||
| + | ====Cs=2.0, R=(0.001, 0.01, 0.1)で実行==== | ||
| + | <div>出力結果 </div> | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.925407e+07 : 1.000000e-03 | ||
| + | 2 7.914252e+05 : 1.000000e-02 | ||
| + | 3 1.196594e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.335248e+07 [A] +- S.D. 1.831795e+07 [A] | ||
| + | Avg. 1335.25 [um] +- S.D. 1831.79 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.052272e+07 : 1.000000e-03 | ||
| + | -2 -8.041104e+05 : 1.000000e-02 | ||
| + | -3 -1.196710e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.377960e+07 [A] +- S.D. 1.891300e+07 [A] | ||
| + | Avg. -1377.96 [um] +- S.D. 1891.30 [um] | ||
| + | </pre> | ||
| + | |||
| + | <div>-oI のデータ</div> | ||
| + | <pre> | ||
| + | stdin 13352485.000000 2.000000 200.000000 0.050000 | ||
| + | </pre> | ||
| + | |||
| + | |||
| + | ===オプション -A=== | ||
| + | ====A=0.1, R=(0.001, 0.01, 0.1)で実行==== | ||
| + | <pre> | ||
| + | >>> Underfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | 1 3.862291e+07 : 1.000000e-03 | ||
| + | 2 7.851137e+05 : 1.000000e-02 | ||
| + | 3 1.190596e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. 1.313998e+07 [A] +- S.D. 1.802192e+07 [A] | ||
| + | Avg. 1314.00 [um] +- S.D. 1802.19 [um] | ||
| + | >>> Overfocus | ||
| + | Ring Number Amount of defocus[A] R[1/A] | ||
| + | -1 -4.115387e+07 : 1.000000e-03 | ||
| + | -2 -8.104219e+05 : 1.000000e-02 | ||
| + | -3 -1.202707e+04 : 1.000000e-01 | ||
| + | --------------------------------------------- | ||
| + | Avg. -1.399211e+07 [A] +- S.D. 1.920903e+07 [A] | ||
| + | Avg. -1399.21 [um] +- S.D. 1920.90 [um] | ||
| + | </pre> | ||
2014年8月20日 (水) 01:37時点における最新版
defocusDeterminationFromThonRingとはEosのコマンドである。
目次
オプション一覧
メインオプション
| オプション | 必須項目/選択項目 | 説明 | デフォルト |
|---|---|---|---|
| -i | 選択 | 入力ファイル設定 | stdin |
| -iN | 選択 | InputNameInInformationFile | stdin |
| -iR | 選択 | InputReferenceForLength: mrcImage | stdin |
| -o | 選択 | 出力ファイル設定: ASCII | stdout |
| -oI | 選択 | OutputInformationFile1: ASCII(mrcImageMultiCTFCompensation and mrcImageCTFCompensation) | stdout |
| -oI2 | 選択 | OutputInformationFile2: ASCII(llDataCTFCompensate -I2) | stdout |
| -oI3 | 選択 | OutputInformationFile3: ASCII(llExtractWithLayerSeparation) Options: -truePitch, -PixelSize, -deltadY and -ctfMode |
stdout |
| -kV | 選択 | 加速電圧: [kV] | 200 |
| -Cs | 選択 | 球面収差係数: [mm] | 2.1 |
| -A | 選択 | The ratio of amplitude contrast to phase contrast | 0.05 |
| -truePitch | 選択 | True Pitch | 430 |
| -PixelSize | 選択 | ピクセルサイズ [A] | 5 |
| -deltadY | 選択 | A range of deltadY to determine dY. | 0.5 |
| -R | 選択 | 可変入力: トーンリング: [/A] | NULL ... |
| -c | 選択 | コンフィグファイル設定 | NULL |
| -m | 選択 | モードを設定 | 0 |
| -ctfMode | 選択 | CTFMode | 0 |
| -h | 選択 | ヘルプを表示 |
モードの詳細
| モード | 説明 |
|---|---|
| 0 |
CTFModeの詳細
| モード | 説明 |
|---|---|
| 0 | Phase CTF |
| 1 | PhaseCTF + ratio*AmpCTF |
実行例
オプション必須項目のみの場合
>>> Underfocus Ring Number Amount of defocus[A] R[1/A] --------------------------------------------- Avg. nan [A] +- S.D. nan [A] Avg. nan [um] +- S.D. nan [um] >>> Overfocus Ring Number Amount of defocus[A] R[1/A] --------------------------------------------- Avg. nan [A] +- S.D. nan [A] Avg. nan [um] +- S.D. nan [um]
オプション -R
R=(0.001, 0.01, 0.1)で実行
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196908e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196396e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
オプション -o, -oI, -oI2
o, oI, oI2をファイル指定, R=(0.001, 0.01, 0.1)で実行
-o のデータ
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196908e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196396e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
-oI のデータ
stdin 13352487.000000 2.100000 200.000000 0.050000
-oI2 のデータ
13352487.000000 2.100000 200.000000 0.050000
オプション -iR
iRをファイル指定, R=(0.001, 0.01, 0.1)で実行
-iR の画像
 |
最小 最大 |
0 (0, 0, 0) 255 (49, 32, 0) |
-oI3をファイル指定で実行
出力結果
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196908e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196396e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
LengthY 400.000000 [A] = LengthY 80 [Pixel] x PixelSize 5.000000 [A/Pixel] x Mag 1.000000
Final CalculatedY 0.930233
CalculatedY 1.000000
deltadY 0.069767
-oI3 のデータ
stdin 1 13352487.000000 2.100000 200.000000 0.050000 0
truePitch=300で実行
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196908e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196396e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
LengthY 400.000000 [A] = LengthY 80 [Pixel] x PixelSize 5.000000 [A/Pixel] x Mag 1.000000
Final CalculatedY 1.333333
CalculatedY 1.000000
deltadY 0.333333
PixelSize=10で実行
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196908e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335249e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196396e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891301e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
LengthY 800.000000 [A] = LengthY 80 [Pixel] x PixelSize 10.000000 [A/Pixel] x Mag 1.000000
Final CalculatedY 1.860465
CalculatedY 2.000000
deltadY 0.139535
オプション -kV
kV=100, R=(0.001, 0.01, 0.1)で実行
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 2.659654e+07 : 1.000000e-03
2 5.362301e+05 : 1.000000e-02
3 8.208672e+03 : 1.000000e-01
---------------------------------------------
Avg. 9.046993e+06 [A] +- S.D. 1.241128e+07 [A]
Avg. 904.70 [um] +- S.D. 1241.13 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -2.745611e+07 : 1.000000e-03
-2 -5.448229e+05 : 1.000000e-02
-3 -8.007123e+03 : 1.000000e-01
---------------------------------------------
Avg. -9.336313e+06 [A] +- S.D. 1.281450e+07 [A]
Avg. -933.63 [um] +- S.D. 1281.45 [um]
オプション -Cs
Cs=2.0, R=(0.001, 0.01, 0.1)で実行
出力結果
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.925407e+07 : 1.000000e-03
2 7.914252e+05 : 1.000000e-02
3 1.196594e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.335248e+07 [A] +- S.D. 1.831795e+07 [A]
Avg. 1335.25 [um] +- S.D. 1831.79 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.052272e+07 : 1.000000e-03
-2 -8.041104e+05 : 1.000000e-02
-3 -1.196710e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.377960e+07 [A] +- S.D. 1.891300e+07 [A]
Avg. -1377.96 [um] +- S.D. 1891.30 [um]
-oI のデータ
stdin 13352485.000000 2.000000 200.000000 0.050000
オプション -A
A=0.1, R=(0.001, 0.01, 0.1)で実行
>>> Underfocus
Ring Number Amount of defocus[A] R[1/A]
1 3.862291e+07 : 1.000000e-03
2 7.851137e+05 : 1.000000e-02
3 1.190596e+04 : 1.000000e-01
---------------------------------------------
Avg. 1.313998e+07 [A] +- S.D. 1.802192e+07 [A]
Avg. 1314.00 [um] +- S.D. 1802.19 [um]
>>> Overfocus
Ring Number Amount of defocus[A] R[1/A]
-1 -4.115387e+07 : 1.000000e-03
-2 -8.104219e+05 : 1.000000e-02
-3 -1.202707e+04 : 1.000000e-01
---------------------------------------------
Avg. -1.399211e+07 [A] +- S.D. 1.920903e+07 [A]
Avg. -1399.21 [um] +- S.D. 1920.90 [um]
