「ctfDetermine」の版間の差分
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(ページの作成:「'''ctfDetermine'''とはEosのコマンドである。 == オプション一覧 == ===メインオプション=== <table border="1"> <tr> <th>オプ...」) |
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| 行26: | 行26: | ||
<td>-D</td> | <td>-D</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>InitialDefocus[A]</td> |
| − | <td></td> | + | <td>0.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Cs</td> | <td>-Cs</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>InitialCs[mm]</td> |
| − | <td></td> | + | <td>1.7</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Cc</td> | <td>-Cc</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>InitialCs[mm]</td> |
| − | <td></td> | + | <td>1.2</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-dE</td> | <td>-dE</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>InitialCs[mm]</td> |
| − | <td></td> | + | <td>0.2</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Ac</td> | <td>-Ac</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Ac[kV]</td> |
| − | <td></td> | + | <td>200</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-CutLow</td> | <td>-CutLow</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>CutOffLowFrequncy[/A]</td> |
| − | <td></td> | + | <td>0.05</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-CutHigh</td> | <td>-CutHigh</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>CutOffHighFrequncy[/A]</td> |
| − | <td></td> | + | <td>0.5</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-I0</td> | <td>-I0</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>I0</td> |
| − | <td></td> | + | <td>1.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-ratio</td> | <td>-ratio</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>ratioOfAmpToPhase</td> |
| − | <td></td> | + | <td>0.1</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Ai</td> | <td>-Ai</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>IlluminationAngle[mrad]</td> |
| − | <td></td> | + | <td>0.03</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-BofMTF</td> | <td>-BofMTF</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>B of MTF [A]</td> |
| − | <td></td> | + | <td>15.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-BofV</td> | <td>-BofV</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>B of Vibration [A]</td> |
| − | <td></td> | + | <td>3.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Mag</td> | <td>-Mag</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Magnification</td> |
| − | <td></td> | + | <td>1.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Noise</td> | <td>-Noise</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Signal/Noise Ratio</td> |
| − | <td></td> | + | <td>0.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-Noise2</td> | <td>-Noise2</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Signal/Noise Ratio</td> |
| − | <td></td> | + | <td>0.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-MolcEnv</td> | <td>-MolcEnv</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Gaussian: Molcular Envelop [A]</td> |
| − | <td></td> | + | <td>0.0</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-MolcEnv2</td> | <td>-MolcEnv2</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>Table: Molcular Envelop</td> |
| − | <td></td> | + | <td>NULL</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-min</td> | <td>-min</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>min of coefficient area</td> |
| − | <td></td> | + | <td>-10</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-max</td> | <td>-max</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>max of coefficient area</td> |
| − | <td></td> | + | <td>10</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-s</td> | <td>-s</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>step of coefficient</td> |
| − | <td></td> | + | <td>0.01</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-d</td> | <td>-d</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>agree of function</td> |
| − | <td></td> | + | <td>6</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>-S</td> | <td>-S</td> | ||
<td>選択</td> | <td>選択</td> | ||
| − | <td></td> | + | <td>section number of fft</td> |
| − | <td></td> | + | <td>4</td> |
</tr> | </tr> | ||
<tr> | <tr> | ||
| 行183: | 行183: | ||
<tr> | <tr> | ||
<td>0</td> | <td>0</td> | ||
| − | <td></td> | + | <td>MinMax Methods (Henderson-like CTF determination) </td> |
| + | </tr> | ||
| + | <tr> | ||
| + | <td>16</td> | ||
| + | <td>Fitting Methods </td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>32</td> | ||
| + | <td>Differential Methods </td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>64</td> | ||
| + | <td>Covariance Methods</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>96</td> | ||
| + | <td>Differential & covariance Methods </td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>128</td> | ||
| + | <td>MinSquare Methods</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>160</td> | ||
| + | <td>Differential+MinSquare Methods by Imamura </td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>161</td> | ||
| + | <td>Differential+MinSquare Methods+NoiseRemoval(+1) </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td> | + | <td>163</td> |
| − | <td></td> | + | <td>Differential+MinSquare Methods+NoiseRemoval(+1)+EnvelopeFromLocalMaxima(+2) </td> |
</tr> | </tr> | ||
</table> | </table> | ||
2013年10月18日 (金) 04:23時点における版
オプション一覧
メインオプション
| オプション | 必須項目/選択項目 | 説明 | デフォルト |
|---|---|---|---|
| -i | 必須 | 入力ファイル設定(mrcImage) | NULL |
| -o | 必須 | 出力ファイル設定(Parameters) | NULL |
| -D | 選択 | InitialDefocus[A] | 0.0 |
| -Cs | 選択 | InitialCs[mm] | 1.7 |
| -Cc | 選択 | InitialCs[mm] | 1.2 |
| -dE | 選択 | InitialCs[mm] | 0.2 |
| -Ac | 選択 | Ac[kV] | 200 |
| -CutLow | 選択 | CutOffLowFrequncy[/A] | 0.05 |
| -CutHigh | 選択 | CutOffHighFrequncy[/A] | 0.5 |
| -I0 | 選択 | I0 | 1.0 |
| -ratio | 選択 | ratioOfAmpToPhase | 0.1 |
| -Ai | 選択 | IlluminationAngle[mrad] | 0.03 |
| -BofMTF | 選択 | B of MTF [A] | 15.0 |
| -BofV | 選択 | B of Vibration [A] | 3.0 |
| -Mag | 選択 | Magnification | 1.0 |
| -Noise | 選択 | Signal/Noise Ratio | 0.0 |
| -Noise2 | 選択 | Signal/Noise Ratio | 0.0 |
| -MolcEnv | 選択 | Gaussian: Molcular Envelop [A] | 0.0 |
| -MolcEnv2 | 選択 | Table: Molcular Envelop | NULL |
| -min | 選択 | min of coefficient area | -10 |
| -max | 選択 | max of coefficient area | 10 |
| -s | 選択 | step of coefficient | 0.01 |
| -d | 選択 | agree of function | 6 |
| -S | 選択 | section number of fft | 4 |
| -c | 選択 | コンフィグファイル設定 | NULL |
| -m | 選択 | モードを設定 | 0 |
| -h | 選択 | ヘルプを表示 |
モードの詳細
| モード | 説明 |
|---|---|
| 0 | MinMax Methods (Henderson-like CTF determination) |
| 16 | Fitting Methods |
| 32 | Differential Methods |
| 64 | Covariance Methods |
| 96 | Differential & covariance Methods |
| 128 | MinSquare Methods |
| 160 | Differential+MinSquare Methods by Imamura |
| 161 | Differential+MinSquare Methods+NoiseRemoval(+1) |
| 163 | Differential+MinSquare Methods+NoiseRemoval(+1)+EnvelopeFromLocalMaxima(+2) |
