Difference between revisions of "List of command"

Revision as of 01:58, 24 September 2012

Alphabetical Command List

• CheckCommonLineData
• CheckOfOrientation
• CheckOrientationByDegree
• CommonLineCalculation
• CommonLineRankCalc_k
• Descartes2Polar
• Display2
• Display3
• Eos
• EvaluateCorrelationMapwithCommonLine
• FETOrientationSearchByAnnealing
• FETOrientationSearchByFeatureAlignment
• FETmapOrientationSearchBySimultaneousFitting
• FETsmallMapSetCreate_forSimultaneousMinimization
• LCalculationForOrientationSearch
• Polar2Descartes
• ProjectionDirectionMapCreate
• StereoDisplay
• TestForLcalculationOfOrientationSearchBySimultaneousMinimization
• Visualmake
• WeightCalculationOfCommonLineSearch
• WeightCalculationOfCommonLineSearchByAllSinogram
• WeigthCaluculationOfCommonLineCalculation
• angleMatchTest_k
• anglediffcalc
• anglediffchk
• array2mrc
• bin2mrc
• calcCommonLine
• clusterLog2ToLog
• clusterLogASCII2Binary
• clusterShow
• commonLinesSearchByVoting
• coordRotation
• ctfDeterminationFromMultiImage
• ctfDeterminationFromPhaseComparison
• ctfDeterminationFromThonRing
• ctfDetermine
• ctfDisplay
• ctfEnvelopFunction
• ctfFunction
• ctfFunctionServer
• ctfInfoSet
• ctfMultiFunction
• ctfWeightMapCreation
• ctfZeroPoint
• cufft
• dataAnalysis_kayabuki
• dcdAtomChangeDistanceFromAtom
• dcdAtomDistanceDistribution
• dcdCompareCA
• dcdDistanceAtomBetweenAtom
• dcdFilePrint
• dcdInfo
• dcdSelectAtoms
• dcdSerectAtom
• dcdTest
• dcdTimeSeriesBehavior
• defocusDeterminationFromThonRing
• dos2unix
• electronWaveLength
• emData2mrc
• energyTransferModelCheck
• energyTransferModelResultCheck
• fft2d
• gmolvie
• hf2000Init
• hf2000LenzCurrent
• hf2000SpecimenPosition
• homology2PG
• hostCondition
• imageView
• imagesClustering
• imagesView
• imodst2mrc
• ip2mrc
• khorosFilterGenerate
• largeIPInfo
• ll2ltlg
• llDataAverage
• llDataAxisSearch
• llDataCTFCompensate
• llDataCompare
• llDataContributionCalcDifferentN
• llDataDump
• llDataEquatorAdd
• llDataExtract
• llDataFit
• llDataFitServer
• llDataInfo
• llDataLowPassFiltering
• llDataMultiCTFCompensation
• llDataNEstimation
• llDataNormalization
• llDataPrint
• llDataRescaling
• llDataResolutionCheck
• llDataRotation
• llDataSelectionEstimation
• llDataSeparate
• llDataWeightSet
• llDatarMaxLimit
• llExtract
• llExtractCtfinfFileCreate
• llExtractCtrlFileCreate
• llExtractWithLayerSeparation
• llExtractWithLayerSeparationCtrlFileCreate
• llExtractWithLayerSeparationCtrlFileCreateMyosin
• llExtractWithLayerSeparationFilamentInfo
• llExtractWithLayerSeparationServer
• llExtractWithLayerSeparationSingle
• ltlg2mrc
• ltlg2ps
• ltlgDataInfo
• mallocCheck
• matrix3DEulerAngleTransform
• matrix3DFromEulerAngle
• matrix3DInverse
• matrix3DToEulerAngle
• moi2mrc
• molecularEnvelopeResampling
• molecularWeightCalc
• molvie
• molvieDock
• molvieFlight
• molvieMrcViewer
• molvieProjection
• molvieViewer
• mrc2Dto3D
• mrc2Dto3DforVariation
• mrc2dsn6
• mrc2fld
• mrc2gif
• mrc2hdf
• mrc2lattice
• mrc2map
• mrc2pov
• mrc2tiff
• mrc2viff
• mrc3DExtractZ
• mrc3Dto2D
• mrcFETnormalizeBySD
• mrcFFTBandPassFilter
• mrcFFTCTFCompensation
• mrcFFTDigitize
• mrcFFTExpression
• mrcFFTFibreDiagram
• mrcFFTFiltering
• mrcFFTIQEstimation
• mrcFFTInfo
• mrcFFTLayerLineCheck
• mrcFFTMedianFilter
• mrcFFTProjection
• mrcFFTResampling
• mrcFFTShellInfo
• mrcFFTSizeChange
• mrcFFTSpectrum
• mrcFFTXFiltering
• mrcFFTplainreduce
• mrcFTMeridianEquatorRedece
• mrcImage1DProjectionfrom2D
• mrcImage1dAverageByCorrelation
• mrcImage1dCutAverage
• mrcImage1dShiftAverageByAnnealing
• mrcImage1dShiftByCorrelation
• mrcImage2DBackProjection
• mrcImage2DProjection
• mrcImage2pdb
• mrcImage3DHighResoEmphasis
• mrcImage3DPad
• mrcImage3DPad2
• mrcImage3DSymmetryFind
• mrcImage3DWindowing
• mrcImageAbnormalValueRemove
• mrcImageActinSingleParticleAnalysis
• mrcImageAdaptiveBinalization
• mrcImageAdd
• mrcImageAddValue
• mrcImageAreaCalc
• mrcImageAssignedToTFofPDB
• mrcImageAutoCorrelationWithWindowing
• mrcImageAutoFilamentExtract
• mrcImageAutoFilamentExtractResultAnalysis
• mrcImageAutoRotationCorrelation
• mrcImageAutoRotationCorrelation3D
• mrcImageAutoRotationCorrelationResultPrint
• mrcImageAverage
• mrcImageBandPassFilter
• mrcImageBinalization
• mrcImageBlockMerge
• mrcImageBoundaryInfo
• mrcImageBtest
• mrcImageCCDNoiseRemove
• mrcImageCTFCompensation
• mrcImageCTFCompensationForTiltImage
• mrcImageCTFDetermination
• mrcImageCTFObservation
• mrcImageCTFSN
• mrcImageCVE
• mrcImageCenterDensityChange
• mrcImageCenterGet
• mrcImageCenterOfMassCalculate
• mrcImageCircumferentialProjection
• mrcImageClusterAnalysis
• mrcImageColoring
• mrcImageCommonLineSearch
• mrcImageConnection
• mrcImageConnectivityNumberCalc
• mrcImageContourSurfaceCreate
• mrcImageCoordinateChange
• mrcImageCoreImageCalc
• mrcImageCorrelation
• mrcImageCorrelationInFourierSpace
• mrcImageCorrelationServer
• mrcImageCorrelationWithCTFCompensation
• mrcImageCrystalCreate
• mrcImageCutAndSetInArray
• mrcImageCylinderSection
• mrcImageDeadPixelCorrection
• mrcImageDensityChangeEstimation
• mrcImageDensityInfo
• mrcImageDensityNormalization
• mrcImageDensityNormalizationByImage
• mrcImageDisplayDensityAsTempFactor
• mrcImageDistanceConversion
• mrcImageDivideInfoForTomography
• mrcImageDivideIntoTwoImages
• mrcImageEdgeImageGet
• mrcImageEnhancementWithFuzzySets
• mrcImageEstimateTiltImage
• mrcImageExpression
• mrcImageFFT
• mrcImageFFTLayerLineExtraction
• mrcImageFOMCalc
• mrcImageFTest
• mrcImageFeatureExtraction
• mrcImageFilamentSearch
• mrcImageFilterCreate
• mrcImageFilteringbyFile
• mrcImageFilteringbyFileForVariance
• mrcImageFourierPowerSpectrum
• mrcImageFourierShellCorrelation
• mrcImageFractalFourierShellCorrelation
• mrcImageFractalFrourierShellCorrelation
• mrcImageGaussDisc
• mrcImageGaussSphere
• mrcImageHeaderChange
• mrcImageHelicalAveraging
• mrcImageHelicalConvolution
• mrcImageHelicalMappingFrom2DImage
• mrcImageHelicalMasking
• mrcImageHelicalMaskingBy2DImage
• mrcImageHelicalProjection
• mrcImageHighPassFilter
• mrcImageHighlighting
• mrcImageInfo
• mrcImageInverseRadonTransform
• mrcImageLabeling
• mrcImageLowPassFilter
• mrcImageMagnificationChange
• mrcImageMake2DArrayImage
• mrcImageMakeCylinder
• mrcImageMakeDump
• mrcImageMakeFromTextFile
• mrcImageMakeSphere
• mrcImageMappingtoPdb
• mrcImageMasking
• mrcImageMaskingByImage
• mrcImageMergebyside
• mrcImageMirroring
• mrcImageModeChange
• mrcImageModelCreate
• mrcImageModelSubfilamentsCreate
• mrcImageMontageCreate
• mrcImageMove
• mrcImageMultiCTFCompensation
• mrcImageMultiCTFDetermination
• mrcImageMultiplying
• mrcImageMultiplyingbyFile
• mrcImageNLMeansFilter
• mrcImageNeuralNetParticleExtraction
• mrcImageNeuralNetParticleLearning
• mrcImageNfoldAxisSearch
• mrcImageNoiseAdd
• mrcImageNoiseCreate
• mrcImageNoiseReductionByRelaxation
• mrcImageNormalDistributionTest
• mrcImageNormalizedSubtraction
• mrcImageNormalizing
• mrcImageNullImageCreate
• mrcImageOddBoxel
• mrcImageOneLineSimilarityCalc
• mrcImageOrientationSearch
• mrcImageOrientationSearchByHigherSelection
• mrcImageOrientationSearchByHybridization
• mrcImageOrientationSearchBySimultaneousMinimization
• mrcImagePCA
• mrcImagePad
• mrcImageParticleCandidateExtract
• mrcImagePeakSearch
• mrcImagePhaseCTFCompensationFromCTFINFO
• mrcImagePixelDataGet
• mrcImagePolyROI
• mrcImagePosterization
• mrcImagePrint
• mrcImagePrint3D
• mrcImageProjection
• mrcImagePut3D
• mrcImageROI
• mrcImageROI3D
• mrcImageROIs
• mrcImageROItoPCAoutputImage
• mrcImageRadialDistribution
• mrcImageRadonTransform
• mrcImageRealValueAdd
• mrcImageRectangleGet
• mrcImageRectangleGetByCorrelation
• mrcImageRefConv2D
• mrcImageRefCreate
• mrcImageRefFFTConv2D
• mrcImageRefScaleChangeWithPad
• mrcImageResolutionEstimateForFilaments
• mrcImageReverse
• mrcImageRotation
• mrcImageRotation3D
• mrcImageSN
• mrcImageSamplingUnitChange
• mrcImageScalarAdd
• mrcImageSectionGet
• mrcImageSetFunction
• mrcImageShapePCA
• mrcImageShift
• mrcImageShiftFollowingGC
• mrcImageShrink
• mrcImageSiemensStar
• mrcImageSimilarImageSearch
• mrcImageSimilarityEstimate
• mrcImageSinogramCorrelation
• mrcImageSinogramCreate
• mrcImageSinogramFFT
• mrcImageSmoothing
• mrcImageSolventFlattening
• mrcImageSphere
• mrcImageSplit
• mrcImageSquare
• mrcImageStack
• mrcImageStandardDeviation
• mrcImageSubtraction
• mrcImageSuperResolution
• mrcImageSymmetryAverage
• mrcImageSymmetryCentreFind
• mrcImageSymmetryFind
• mrcImageTTest
• mrcImageTfunction
• mrcImageTiltAxisSearch
• mrcImageTiltAxisSearchHelp
• mrcImageToNAMDConstantForces
• mrcImageTrans
• mrcImageTransformDescartesIntoPolar
• mrcImageTransformSign
• mrcImageTranspose
• mrcImageTwoImageTest
• mrcImageUnbentROI
• mrcImageUnexpectedMassFromPDB
• mrcImageUntwist
• mrcImageVarianceAnalysis
• mrcImageVarianceMap
• mrcImageVolumeCalc
• mrcImageWindowing
• mrcImageZPad
• mrcImagepdbFileReduce
• mrcImagesSinogramCorrelation
• mrcImagestoRef
• mrcInfo
• mrcInfoSet
• mrcManipulate_kaya
• mrcMask
• mrcMeanYlinePos
• mrcMirrorImageCreate
• mrcRadon2Dto3D
• mrcRefCorEstimate
• mrcRefCorModify
• mrcRefCoreGet
• mrcRefCorrelation
• mrcRefCorrelationConv
• mrcRefEstimate
• mrcRefFFTConvert
• mrcRefHeaderCreate
• mrcRefHighPassFilter
• mrcRefImageCorrelation
• mrcRefImageOmegaCorrelation
• mrcRefImagepwzCorEstimate
• mrcRefImagepwzCorModify
• mrcRefImagepwzCorPeakFind
• mrcRefImagepwzCorSmoothing
• mrcRefImagepwzCorrelation
• mrcRefImagepwzCorrelationByFFT
• mrcRefImagexaFit
• mrcRefLowPassFilter
• mrcRefNoiseAdd
• mrcRefNormalizing
• mrcRefPhaseImageCreate
• mrcRefSmoothing
• mrcRefz1ImageCorrelation
• mrcSinogramFET
• mrcSinogramFETcalcSDforNormalize
• mrcSinogramFETcalcWeight
• mrcSinogramFETcorrelationMap
• mrcSinogramFETnormalizedMap
• mrcSinogramFETreferredCorrelation
• mrcSinogramFETsmoothParameterMatching
• mrcView
• muscleSimulation
• obj3Don2DImageView
• openGLTest
• pdb2SketchMacro
• pdb2bender
• pdb2mrc
• pdb2mrc2d
• pdb2mrc2dWithCTF
• pdb2ucd
• pdbAtomSection
• pdbCAOnly
• pdbChargeFit
• pdbCoordAdd
• pdbCrystalCreate
• pdbDisplay
• pdbFileMerge
• pdbHelix
• pdbHomologySearch
• pdbInfo
• pdbListRMSDCalc
• pdbMatrixCreate
• pdbMolecularInterfaceFind
• pdbMove
• pdbNAMDRestraintCreate
• pdbNearAtomListShow
• pdbOneProteinGet
• pdbPCA
• pdbProteinIDSet
• pdbRhoFit
• pdbRhoFitCoiledCoil
• pdbRhoFitTm
• pdbRotation
• pdbSecondaryStructurePrint
• pdbShapeFit
• pdbSurface
• pdbTempFactorSet
• pdbTrans
• pdbTwoProteinFit
• pdbView
• pdbWaterAdd
• pgDataBaseSelectServer
• pgJournalSelect
• pgJournalSelectCORBAClient
• pgJournalSelectCORBAServer
• pgMemoSelectCORBAServer
• pgSelect
• pointAffineTransform
• psFileMerge
• psFilePageMerge
• randomNormalGet
• randomUniformGet
• rasmonyo
• smolet
• tgaInfo
• tiff2mrc
• tiltInfoDetermine
• vector2pdb
• vectorImageNearestNeighborMethod