「機能別コマンド一覧」の版間の差分
提供: Eospedia
| 行40: | 行40: | ||
*[[ctfDeterminationFromPhaseComparison]] | *[[ctfDeterminationFromPhaseComparison]] | ||
*[[ctfDeterminationFromThonRing]] | *[[ctfDeterminationFromThonRing]] | ||
| + | *[[defocusDeterminationFromThonRing]] | ||
*[[ctfDetermine]] | *[[ctfDetermine]] | ||
| 行64: | 行65: | ||
*[[mrc3Dto2D]] | *[[mrc3Dto2D]] | ||
*[[mrcRadon2Dto3D]] | *[[mrcRadon2Dto3D]] | ||
| + | |||
| + | === トモグラフィー支援 === | ||
| + | *[[mrcImageTiltAxisSearch]] | ||
| + | *[[mrcImageTiltAxisSearchHelp]] | ||
| + | |||
| + | === 単粒子解析サポート === | ||
| + | *[[mrcImageOrientationSearch]] | ||
| + | *[[mrcImageOrientationSearchByHigherSelection]] | ||
| + | *[[mrcImageOrientationSearchByHybridization]] | ||
| + | *[[mrcImageOrientationSearchBySimultaneousMinimization]] | ||
| + | |||
=== ラドン空間（シノグラム）を用いた解析 === | === ラドン空間（シノグラム）を用いた解析 === | ||
| 行75: | 行87: | ||
*[[mrcImageSinogramCorrelation]] | *[[mrcImageSinogramCorrelation]] | ||
*[[commonLinesSearchByVoting]] | *[[commonLinesSearchByVoting]] | ||
| + | *[[mrcImageCommonLineSearch]] | ||
*[[WeightCalculationOfCommonLineSearch]] | *[[WeightCalculationOfCommonLineSearch]] | ||
*[[WeightCalculationOfCommonLineSearchByAllSinogram]] | *[[WeightCalculationOfCommonLineSearchByAllSinogram]] | ||
| 行96: | 行109: | ||
==== 空間の変換 ==== | ==== 空間の変換 ==== | ||
*[[llExtract]]: FFT -> G | *[[llExtract]]: FFT -> G | ||
| + | *[[mrcImageAutoFilamentExtract]] | ||
| + | *[[mrcImageAutoFilamentExtractResultAnalysis]] | ||
| + | |||
*[[ll2ltlg]] : G -> g | *[[ll2ltlg]] : G -> g | ||
| + | |||
*[[ltlg2mrc]] : g -> 3D | *[[ltlg2mrc]] : g -> 3D | ||
| 行138: | 行155: | ||
*[[ltlgDataInfo]] | *[[ltlgDataInfo]] | ||
| + | ==== らせん対称を用いた画像処理 ==== | ||
| + | *[[mrcImageHelicalAveraging]] | ||
| + | *[[mrcImageHelicalConvolution]] | ||
| + | *[[mrcImageHelicalMappingFrom2DImage]] | ||
| + | *[[mrcImageHelicalMasking]] | ||
| + | *[[mrcImageCylinderSection]] | ||
| + | === 分解能チェックのためのツール === | ||
| + | *[[mrcImageFOMCalc]] | ||
| + | *[[mrcImageFourierShellCorrelation]] | ||
| + | *[[mrcImageFractalFourierShellCorrelation]] | ||
| + | === ３Ｄモデリングのためのツール === | ||
| + | *[[mrcImageToNAMDConstantForces]] | ||
== mrcImageフォーマットに対するコマンド群 == | == mrcImageフォーマットに対するコマンド群 == | ||
| 行149: | 行178: | ||
=== モデル作成 === | === モデル作成 === | ||
| + | *[[mrcImageModelCreate]] | ||
*[[mrcImageSphere]] | *[[mrcImageSphere]] | ||
| − | *[[ | + | *[[mrcImageGaussDisc]] |
| + | *[[mrcImageGaussSphere]] | ||
| + | *[[mrcImageSiemensStar]] | ||
| + | *[[mrcImageCrystalCreate]] | ||
| + | === 未分類 === | ||
*[[mrc3DExtractZ]] | *[[mrc3DExtractZ]] | ||
*[[mrcImage1DProjectionfrom2D]] | *[[mrcImage1DProjectionfrom2D]] | ||
| 行161: | 行195: | ||
*[[mrcImage2DBackProjection]] | *[[mrcImage2DBackProjection]] | ||
*[[mrcImage2DProjection]] | *[[mrcImage2DProjection]] | ||
| + | |||
*[[mrcImage2pdb]] | *[[mrcImage2pdb]] | ||
*[[mrcImageActinSingleParticleAnalysis]] | *[[mrcImageActinSingleParticleAnalysis]] | ||
| − | + | ||
*[[mrcImageAssignedToTFofPDB]] | *[[mrcImageAssignedToTFofPDB]] | ||
| − | |||
| − | |||
| − | |||
*[[mrcImageBlockMerge]] | *[[mrcImageBlockMerge]] | ||
| − | |||
| − | |||
| − | |||
*[[mrcImageCenterDensityChange]] | *[[mrcImageCenterDensityChange]] | ||
*[[mrcImageCenterOfMassCalculate]] | *[[mrcImageCenterOfMassCalculate]] | ||
*[[mrcImageCircumferentialProjection]] | *[[mrcImageCircumferentialProjection]] | ||
| − | + | ||
| − | + | ||
*[[mrcImageContourSurfaceCreate]] | *[[mrcImageContourSurfaceCreate]] | ||
*[[mrcImageCoordinateChange]] | *[[mrcImageCoordinateChange]] | ||
*[[mrcImageCoreImageCalc]] | *[[mrcImageCoreImageCalc]] | ||
| − | |||
*[[mrcImageCutAndSetInArray]] | *[[mrcImageCutAndSetInArray]] | ||
| − | |||
*[[mrcImageDeadPixelCorrection]] | *[[mrcImageDeadPixelCorrection]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
*[[mrcImageDisplayDensityAsTempFactor]] | *[[mrcImageDisplayDensityAsTempFactor]] | ||
| 行202: | 行224: | ||
*[[mrcImageEstimateTiltImage]] | *[[mrcImageEstimateTiltImage]] | ||
*[[mrcImageExpression]] | *[[mrcImageExpression]] | ||
| − | |||
*[[mrcImageFFTLayerLineExtraction]] | *[[mrcImageFFTLayerLineExtraction]] | ||
| − | |||
*[[mrcImageFTest]] | *[[mrcImageFTest]] | ||
*[[mrcImageFeatureExtraction]] | *[[mrcImageFeatureExtraction]] | ||
| 行212: | 行232: | ||
*[[mrcImageFilteringbyFileForVariance]] | *[[mrcImageFilteringbyFileForVariance]] | ||
*[[mrcImageFourierPowerSpectrum]] | *[[mrcImageFourierPowerSpectrum]] | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
*[[mrcImageHeaderChange]] | *[[mrcImageHeaderChange]] | ||
| − | + | ||
| − | + | ||
| − | + | ||
| − | + | ||
*[[mrcImageHelicalMaskingBy2DImage]] | *[[mrcImageHelicalMaskingBy2DImage]] | ||
*[[mrcImageHelicalProjection]] | *[[mrcImageHelicalProjection]] | ||
| 行243: | 行257: | ||
[[mrcImageModelSubfilamentsCreate]] | [[mrcImageModelSubfilamentsCreate]] | ||
[[mrcImageMontageCreate]] | [[mrcImageMontageCreate]] | ||
| − | |||
[[mrcImageMultiCTFCompensation]] | [[mrcImageMultiCTFCompensation]] | ||
[[mrcImageMultiCTFDetermination]] | [[mrcImageMultiCTFDetermination]] | ||
| 行261: | 行274: | ||
[[mrcImageOddBoxel]] | [[mrcImageOddBoxel]] | ||
[[mrcImageOneLineSimilarityCalc]] | [[mrcImageOneLineSimilarityCalc]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
[[mrcImageParticleCandidateExtract]] | [[mrcImageParticleCandidateExtract]] | ||
[[mrcImagePeakSearch]] | [[mrcImagePeakSearch]] | ||
| 行288: | 行296: | ||
[[mrcImageReverse]] | [[mrcImageReverse]] | ||
| − | |||
| − | |||
| − | |||
[[mrcImageSetFunction]] | [[mrcImageSetFunction]] | ||
[[mrcImageShapePCA]] | [[mrcImageShapePCA]] | ||
| 行296: | 行301: | ||
[[mrcImageShrink]] | [[mrcImageShrink]] | ||
| − | + | ||
[[mrcImageSimilarImageSearch]] | [[mrcImageSimilarImageSearch]] | ||
[[mrcImageSimilarityEstimate]] | [[mrcImageSimilarityEstimate]] | ||
| 行310: | 行315: | ||
[[mrcImageSuperResolution]] | [[mrcImageSuperResolution]] | ||
| − | |||
[[mrcImageTfunction]] | [[mrcImageTfunction]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
[[mrcImageTransformDescartesIntoPolar]] | [[mrcImageTransformDescartesIntoPolar]] | ||
| 行323: | 行323: | ||
[[mrcImageUnexpectedMassFromPDB]] | [[mrcImageUnexpectedMassFromPDB]] | ||
[[mrcImageUntwist]] | [[mrcImageUntwist]] | ||
| − | |||
| − | |||
| − | |||
| − | |||
[[mrcImageZPad]] | [[mrcImageZPad]] | ||
[[mrcImagepdbFileReduce]] | [[mrcImagepdbFileReduce]] | ||
[[mrcImagesSinogramCorrelation]] | [[mrcImagesSinogramCorrelation]] | ||
| − | |||
[[mrcManipulate_kaya]] | [[mrcManipulate_kaya]] | ||
[[mrcMask]] | [[mrcMask]] | ||
[[mrcMeanYlinePos]] | [[mrcMeanYlinePos]] | ||
| − | + | ||
[[cufft]] | [[cufft]] | ||
[[dataAnalysis_kayabuki]] | [[dataAnalysis_kayabuki]] | ||
| − | + | ||
[[electronWaveLength]] | [[electronWaveLength]] | ||
| 行360: | 行355: | ||
=== 画像の情報 === | === 画像の情報 === | ||
*[[mrcInfo]] | *[[mrcInfo]] | ||
| − | |||
*[[mrcImageInfo]] | *[[mrcImageInfo]] | ||
*[[mrcImageVolumeCalc]]：3次元画像から分子量に対応する体積をもつ等高面値 | *[[mrcImageVolumeCalc]]：3次元画像から分子量に対応する体積をもつ等高面値 | ||
*[[mrcImageBoundaryInfo]] | *[[mrcImageBoundaryInfo]] | ||
| + | *[[mrcImageDensityInfo]] | ||
| + | |||
| + | *[[mrcInfoSet]] | ||
*[[mrcImageModeChange]] | *[[mrcImageModeChange]] | ||
| + | *[[mrcImageSamplingUnitChange]] | ||
| + | |||
| + | *[[mrcImageSectionGet]] | ||
| + | |||
| + | === 画像フォーマット変換 === | ||
| + | *[[mrcImagestoRef]] | ||
| + | *[[mrcImageColoring]] | ||
=== 前処理関連 === | === 前処理関連 === | ||
| 行376: | 行380: | ||
*[[mrcImage3DPad]] | *[[mrcImage3DPad]] | ||
*[[mrcImage3DPad2]] | *[[mrcImage3DPad2]] | ||
| + | |||
| + | *[[mrcImageDensityChangeEstimation]] | ||
| + | *[[mrcImageDensityNormalization]] | ||
| + | *[[mrcImageDensityNormalizationByImage]] | ||
| + | |||
=== 画像の統計処理 === | === 画像の統計処理 === | ||
*[[mrcImageAverage]] | *[[mrcImageAverage]] | ||
*[[mrcImageTwoImageTest]] | *[[mrcImageTwoImageTest]] | ||
| − | + | *[[mrcImageVarianceAnalysis]] | |
| − | + | *[[mrcImageVarianceMap]] | |
| + | *[[mrcImageTTest]] | ||
| + | *[[mrcImageSN]] | ||
| + | *[[mrcImageBtest]] | ||
| + | *[[mrcImagePCA]] | ||
=== 画像の抽出・切り出し：ROI(Region of Interest) === | === 画像の抽出・切り出し：ROI(Region of Interest) === | ||
| 行389: | 行402: | ||
*[[mrcImageROI3D]]: 3次元画像からのROIエリアの切り出し | *[[mrcImageROI3D]]: 3次元画像からのROIエリアの切り出し | ||
*[[mrcImageCenterGet]]:画像の中央（中央の指定は可能）を切り出す | *[[mrcImageCenterGet]]:画像の中央（中央の指定は可能）を切り出す | ||
| − | |||
=== 縦軸（密度）方向の変換 === | === 縦軸（密度）方向の変換 === | ||
| 行406: | 行418: | ||
*[[mrcImageRotation3D]] | *[[mrcImageRotation3D]] | ||
*[[mrcImageMirroring]] | *[[mrcImageMirroring]] | ||
| − | |||
*[[mrcImageShift]] | *[[mrcImageShift]] | ||
| + | *[[mrcImageMove]] | ||
*[[mrcImageShiftFollowingGC]] | *[[mrcImageShiftFollowingGC]] | ||
| + | *[[mrcMirrorImageCreate]] | ||
=== 二値画像の処理 === | === 二値画像の処理 === | ||
| − | |||
*[[mrcImageBinalization]] | *[[mrcImageBinalization]] | ||
| + | *[[mrcImageAdaptiveBinalization]] | ||
| + | |||
*[[mrcImageConnection]] | *[[mrcImageConnection]] | ||
*[[mrcImageConnectivityNumberCalc]] | *[[mrcImageConnectivityNumberCalc]] | ||
*[[mrcImageAreaCalc]] | *[[mrcImageAreaCalc]] | ||
| + | |||
| + | === フーリエ変換 === | ||
| + | *[[mrcImageFFT]] | ||
=== 画像の類似度 === | === 画像の類似度 === | ||
| 行425: | 行442: | ||
*[[mrcImageCorrelationServer]] | *[[mrcImageCorrelationServer]] | ||
*[[mrcImageCorrelationWithCTFCompensation]] | *[[mrcImageCorrelationWithCTFCompensation]] | ||
| + | *[[mrcImageAutoCorrelationWithWindowing]] | ||
=== 画像の対称性を使った解析 === | === 画像の対称性を使った解析 === | ||
| 行487: | 行505: | ||
*[[clusterLogASCII2Binary]] | *[[clusterLogASCII2Binary]] | ||
*[[clusterShow]] | *[[clusterShow]] | ||
| + | |||
== PDB関係のコマンド群 == | == PDB関係のコマンド群 == | ||
| 行642: | 行661: | ||
=== その他 === | === その他 === | ||
*[[muscleSimulation]] | *[[muscleSimulation]] | ||
| + | |||
| + | === 整理が必要 === | ||
| + | *[[mrcImageFractalFrourierShellCorrelation]] | ||
2012年9月23日 (日) 22:32時点における版
ここでは、機能別に少しずつ整理をしています。まだまだ整理が終わっていません。すこしずつ進めていますので、ご容赦下さい。
目次
統合環境
画像表示とその処理
- Display2: ２Ｄ画像もしくは３Ｄ画像のセクションの表示、処理など
- Display3: ３Ｄ画像の表示
- smolet: トモグラフィーのためのGUIソフトウェア（傾斜シリーズの表示）
- ctfDisplay: For CTF Correlation
Eosのプラットフォーム環境
- Visualmake: Easy and automatics GUI generator for Makefile
- Eos: Eos on Tcl/Tk, CUI
- PIONE
簡易画像表示プログラム
molvieシリーズ
開発環境
ＣＴＦ関係のコマンド群
CTF決定のためのプログラム群
- ctfDisplay: CTFの決定のためのプログラム(GUI)
- ctfDeterminationFromMultiImage
- ctfDeterminationFromPhaseComparison
- ctfDeterminationFromThonRing
- defocusDeterminationFromThonRing
- ctfDetermine
CTFの関数に関するプログラム
CTF補正に関するプログラム群
- ctfInfoSet
- ctfMultiFunction
- ctfWeightMapCreation
- mrcImageCTFCompensation
- mrcImageCTFCompensationForTiltImage
- mrcImageCTFDetermination
- mrcImageCTFObservation
- mrcImageCTFSN
3次元再構成
汎用3次元再構成
トモグラフィー支援
単粒子解析サポート
- mrcImageOrientationSearch
- mrcImageOrientationSearchByHigherSelection
- mrcImageOrientationSearchByHybridization
- mrcImageOrientationSearchBySimultaneousMinimization
ラドン空間（シノグラム）を用いた解析
ラドン空間の変換
コモンラインの探索
- mrcImageSinogramCorrelation
- commonLinesSearchByVoting
- mrcImageCommonLineSearch
- WeightCalculationOfCommonLineSearch
- WeightCalculationOfCommonLineSearchByAllSinogram
- WeigthCaluculationOfCommonLineCalculation
- CommonLineCalculation
- CommonLineRankCalc_k
特徴量を用いたシノグラム解析
- mrcSinogramFET
- mrcSinogramFETcalcSDforNormalize
- mrcSinogramFETcalcWeight
- mrcSinogramFETcorrelationMap
- mrcSinogramFETnormalizedMap
- mrcSinogramFETreferredCorrelation
- mrcSinogramFETsmoothParameterMatching
特徴量を用いた３次元再構成
らせん対称性を用いた3次元再構成
空間の変換
- ll2ltlg : G -> g
- ltlg2mrc : g -> 3D
llExtractのサポートプログラム群
- llExtractCtfinfFileCreate
- llExtractCtrlFileCreate
- llExtractWithLayerSeparation
- llExtractWithLayerSeparationCtrlFileCreate
- llExtractWithLayerSeparationCtrlFileCreateMyosin
- llExtractWithLayerSeparationFilamentInfo
- llExtractWithLayerSeparationServer
- llExtractWithLayerSeparationSingle
G(R, THETA, Z)空間の取り扱い
- llDataAverage
- llDataAxisSearch
- llDataCTFCompensate
- llDataCompare
- llDataContributionCalcDifferentN
- llDataDump
- llDataEquatorAdd
- llDataExtract
- llDataFit
- llDataFitServer
- llDataInfo
- llDataLowPassFiltering
- llDataMultiCTFCompensation
- llDataNEstimation
- llDataNormalization
- llDataPrint: G(R, THETA, Z)空間の表示
- llDataRescaling
- llDataResolutionCheck
- llDataRotation
- llDataSelectionEstimation
- llDataSeparate
- llDataWeightSet
- llDatarMaxLimit
g(r, theta, Z) の取り扱い
らせん対称を用いた画像処理
- mrcImageHelicalAveraging
- mrcImageHelicalConvolution
- mrcImageHelicalMappingFrom2DImage
- mrcImageHelicalMasking
- mrcImageCylinderSection
分解能チェックのためのツール
３Ｄモデリングのためのツール
mrcImageフォーマットに対するコマンド群
画像の演算
モデル作成
- mrcImageModelCreate
- mrcImageSphere
- mrcImageGaussDisc
- mrcImageGaussSphere
- mrcImageSiemensStar
- mrcImageCrystalCreate
未分類
- mrc3DExtractZ
- mrcImage1DProjectionfrom2D
- mrcImage1dAverageByCorrelation
- mrcImage1dCutAverage
- mrcImage1dShiftAverageByAnnealing
- mrcImage1dShiftByCorrelation
- mrcImage2DBackProjection
- mrcImage2DProjection
- mrcImageEdgeImageGet
- mrcImageEstimateTiltImage
- mrcImageExpression
- mrcImageFFTLayerLineExtraction
- mrcImageFTest
- mrcImageFeatureExtraction
- mrcImageFilamentSearch
- mrcImageFilterCreate
- mrcImageFilteringbyFile
- mrcImageFilteringbyFileForVariance
- mrcImageFourierPowerSpectrum
mrcImageInverseRadonTransform mrcImageLabeling mrcImageLowPassFilter mrcImageMagnificationChange mrcImageMake2DArrayImage mrcImageMakeCylinder mrcImageMakeDump mrcImageMakeFromTextFile mrcImageMakeSphere mrcImageMappingtoPdb mrcImageMasking mrcImageMaskingByImage mrcImageMergebyside
mrcImageModelSubfilamentsCreate
mrcImageMontageCreate
mrcImageMultiCTFCompensation
mrcImageMultiCTFDetermination
mrcImageMultiplying
mrcImageMultiplyingbyFile
mrcImageNLMeansFilter
mrcImageNeuralNetParticleExtraction
mrcImageNeuralNetParticleLearning
mrcImageNfoldAxisSearch
mrcImageNoiseAdd
mrcImageNoiseCreate
mrcImageNoiseReductionByRelaxation
mrcImageNormalDistributionTest
mrcImageNormalizedSubtraction
mrcImageNormalizing
mrcImageNullImageCreate
mrcImageOddBoxel
mrcImageOneLineSimilarityCalc
mrcImageParticleCandidateExtract
mrcImagePeakSearch
mrcImagePhaseCTFCompensationFromCTFINFO
mrcImagePixelDataGet
mrcImagePolyROI
mrcImagePosterization
mrcImageProjection mrcImagePut3D mrcImageROItoPCAoutputImage mrcImageRadialDistribution
mrcImageRealValueAdd mrcImageRectangleGet mrcImageRectangleGetByCorrelation mrcImageRefConv2D mrcImageRefCreate mrcImageRefFFTConv2D mrcImageRefScaleChangeWithPad mrcImageResolutionEstimateForFilaments mrcImageReverse
mrcImageSetFunction mrcImageShapePCA
mrcImageSimilarImageSearch mrcImageSimilarityEstimate mrcImageSmoothing mrcImageSolventFlattening
mrcImageSplit
mrcImageSquare
mrcImageStack
mrcImageStandardDeviation
mrcImageSubtraction
mrcImageSuperResolution
mrcImageTransformDescartesIntoPolar mrcImageTransformSign
mrcImageUnexpectedMassFromPDB mrcImageUntwist
mrcImageZPad mrcImagepdbFileReduce mrcImagesSinogramCorrelation mrcManipulate_kaya mrcMask mrcMeanYlinePos
electronWaveLength energyTransferModelCheck energyTransferModelResultCheck fft2d gmolvie homology2PG hostCondition
imageView imagesClustering imagesView
khorosFilterGenerate
largeIPInfo
画像の情報
- mrcInfo
- mrcImageInfo
- mrcImageVolumeCalc：3次元画像から分子量に対応する体積をもつ等高面値
- mrcImageBoundaryInfo
- mrcImageDensityInfo
画像フォーマット変換
前処理関連
画像の統計処理
- mrcImageAverage
- mrcImageTwoImageTest
- mrcImageVarianceAnalysis
- mrcImageVarianceMap
- mrcImageTTest
- mrcImageSN
- mrcImageBtest
- mrcImagePCA
画像の抽出・切り出し：ROI(Region of Interest)
- mrcImageROI：２次元画像からの単一のROI画像の切り出し
- mrcImageROIs：２次元画像からの複数のROI画像の切り出し
- mrcImageUnbentROI：２次元画像からのスプライン曲線に則った切り出し
- mrcImageROI3D: 3次元画像からのROIエリアの切り出し
- mrcImageCenterGet:画像の中央（中央の指定は可能）を切り出す
縦軸（密度）方向の変換
空間周波数フィルタ
画像の移動・回転
- mrcImageTrans
- mrcImageTranspose
- mrcImageRotation
- mrcImageRotation3D
- mrcImageMirroring
- mrcImageShift
- mrcImageMove
- mrcImageShiftFollowingGC
- mrcMirrorImageCreate
二値画像の処理
フーリエ変換
画像の類似度
- mrcImageAutoRotationCorrelation
- mrcImageAutoRotationCorrelation3D
- mrcImageAutoRotationCorrelationResultPrint
- mrcImageCorrelation
- mrcImageCorrelationInFourierSpace
- mrcImageCorrelationServer
- mrcImageCorrelationWithCTFCompensation
- mrcImageAutoCorrelationWithWindowing
画像の対称性を使った解析
mrcFFT（フーリエ空間）を処理するためのコマンド群
- mrcFTMeridianEquatorRedece
- mrcFFTBandPassFilter
- mrcFFTCTFCompensation
- mrcFFTDigitize
- mrcFFTExpression
- mrcFFTFibreDiagram
- mrcFFTFiltering
- mrcFFTIQEstimation
- mrcFFTInfo
- mrcFFTLayerLineCheck
- mrcFFTMedianFilter
- mrcFFTProjection
- mrcFFTResampling
- mrcFFTShellInfo
- mrcFFTSizeChange
- mrcFFTSpectrum
- mrcFFTXFiltering
- mrcFFTplainreduce
画像の出力
mrcRef関連
mrcRefCorEstimate mrcRefCorModify mrcRefCoreGet mrcRefCorrelation mrcRefCorrelationConv mrcRefEstimate mrcRefFFTConvert mrcRefHeaderCreate mrcRefHighPassFilter mrcRefImageCorrelation mrcRefImageOmegaCorrelation mrcRefImagepwzCorEstimate mrcRefImagepwzCorModify mrcRefImagepwzCorPeakFind mrcRefImagepwzCorSmoothing mrcRefImagepwzCorrelation mrcRefImagepwzCorrelationByFFT mrcRefImagexaFit mrcRefLowPassFilter mrcRefNoiseAdd mrcRefNormalizing mrcRefPhaseImageCreate mrcRefSmoothing mrcRefz1ImageCorrelation
クラスター解析に関するツール
PDB関係のコマンド群
- pdb2SketchMacro
- pdb2bender
- pdb2mrc
- pdb2mrc2d
- pdb2mrc2dWithCTF
- pdb2ucd
- pdbAtomSection
- pdbCAOnly
- pdbChargeFit
- pdbCoordAdd
- pdbCrystalCreate
- pdbDisplay
- pdbFileMerge
- pdbHelix
- pdbHomologySearch
- pdbInfo
- pdbListRMSDCalc
- pdbMatrixCreate
- pdbMolecularInterfaceFind
- pdbMove
- pdbNAMDRestraintCreate
- pdbNearAtomListShow
- pdbOneProteinGet
- pdbPCA
- pdbProteinIDSet
- pdbRhoFit
- pdbRhoFitCoiledCoil
- pdbRhoFitTm
- pdbRotation
- pdbSecondaryStructurePrint
- pdbShapeFit
- pdbSurface
- pdbTempFactorSet
- pdbTrans
- pdbTwoProteinFit
- pdbView
- pdbWaterAdd
tiltInfoDetermine vectorImageNearestNeighborMethod
画像フォーマット等のフィルター
他のファイルフォーマットからMRC形式へ変換
MRC形式から他のフォーマットへの変換
pgFormat方のファイルに対するプログラム
- pgDataBaseSelectServer
- pgJournalSelect
- pgJournalSelectCORBAClient
- pgJournalSelectCORBAServer
- pgMemoSelectCORBAServer
- pgSelect
ポストスクリプトファイルの取り扱いに関するプログラム
DCDフォーマットのファイルに関する取り扱い
- dcdAtomChangeDistanceFromAtom
- dcdAtomDistanceDistribution
- dcdCompareCA
- dcdDistanceAtomBetweenAtom
- dcdFilePrint
- dcdInfo
- dcdSelectAtoms
- dcdSerectAtom
- dcdTest
- dcdTimeSeriesBehavior
その他
コマンドリスト
CheckCommonLineData CheckOfOrientation CheckOrientationByDegree
EvaluateCorrelationMapwithCommonLine
FETOrientationSearchByAnnealing FETOrientationSearchByFeatureAlignment FETmapOrientationSearchBySimultaneousFitting FETsmallMapSetCreate_forSimultaneousMinimization
LCalculationForOrientationSearch
Polar2Descartes ProjectionDirectionMapCreate
TestForLcalculationOfOrientationSearchBySimultaneousMinimization
angleMatchTest_k
anglediffcalc
anglediffchk
その他
分子の取り扱い
matrix3Dの取り扱い（3次元空間変換用4x4行列)
乱数の発生
- randomUniformGet:一様乱数
- randomNormalGet：正規分布に従う乱数
