「コマンド一覧」の版間の差分
提供: Eospedia
(ページの作成: Eosに実装されているコマンドの一覧。 *CTFDetermination *CheckCommonLineData *CheckOfOrientation *CheckOrientationByDegree *Chie *[[Com...) |
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| (3人の利用者による、間の39版が非表示) | |||
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| − | [[Eos]]に実装されている[[コマンド]] | + | [[Eos]]に実装されている[[コマンド]]の一覧(アルファベット順)。機能別のコマンドを調べたいときには[[機能別コマンド一覧|こちら]]をご覧下さい。 |
| + | *[[:File:Eospedia.zip|こちらのシェルスクリプト]]を使用すると、ターミナルなどからの入力で各コマンドのページに移動することができます。 | ||
| + | *[[templateCommandWiki コマンドのヘルプを書くためのテンプレート]] | ||
| + | *このコマンド一覧は[[:File:doc_comlist.sh.zip|こちらのシェルスクリプト]]を利用して作成しています。 | ||
| − | *[[ | + | == コマンド一覧 == |
| + | *[[anglediffcalc]] | ||
| + | *[[anglediffchk]] | ||
| + | *[[angleMatchTest_k]] | ||
| + | *[[array2mrc]] | ||
| + | *[[arrayPCA]] | ||
| + | *[[bin2mrc]] | ||
| + | *[[bmp2mrc]] | ||
| + | *[[bmpFileInfo]] | ||
| + | *[[calcCommonLine]] | ||
*[[CheckCommonLineData]] | *[[CheckCommonLineData]] | ||
*[[CheckOfOrientation]] | *[[CheckOfOrientation]] | ||
*[[CheckOrientationByDegree]] | *[[CheckOrientationByDegree]] | ||
| − | *[[ | + | *[[clusterLog2ToLog]] |
| + | *[[clusterLogASCII2Binary]] | ||
| + | *[[clusterShow]] | ||
*[[CommonLineCalculation]] | *[[CommonLineCalculation]] | ||
*[[CommonLineRankCalc_k]] | *[[CommonLineRankCalc_k]] | ||
| − | *[[ | + | *[[commonLinesSearchByVoting]] |
| + | *[[coordRotation]] | ||
| + | *[[ctfDeterminationFromMultiImage]] | ||
| + | *[[ctfDeterminationFromPhaseComparison]] | ||
| + | *[[ctfDeterminationFromThonRing]] | ||
| + | *[[ctfDetermine]] | ||
| + | *[[ctfDisplay]] | ||
| + | *[[ctfEnvelopFunction]] | ||
| + | *[[ctfEnvelopFunctionEstimate]] | ||
| + | *[[ctfFunction]] | ||
| + | *[[ctfFunctionServer]] | ||
| + | *[[ctfInfoSet]] | ||
| + | *[[ctfMultiFunction]] | ||
| + | *[[ctfWeightMapCreation]] | ||
| + | *[[ctfZeroPoint]] | ||
| + | *[[cufft]] | ||
| + | *[[dataAnalysis_kayabuki]] | ||
| + | *[[dcdAtomChangeDistanceFromAtom]] | ||
| + | *[[dcdAtomDistanceDistribution]] | ||
| + | *[[dcdCompareCA]] | ||
| + | *[[dcdDistanceAtomBetweenAtom]] | ||
| + | *[[dcdFilePrint]] | ||
| + | *[[dcdInfo]] | ||
| + | *[[dcdSelectAtoms]] | ||
| + | *[[dcdSerectAtom]] | ||
| + | *[[dcdTest]] | ||
| + | *[[dcdTimeSeriesBehavior]] | ||
| + | *[[defocusDeterminationFromThonRing]] | ||
*[[Descartes2Polar]] | *[[Descartes2Polar]] | ||
*[[Display2]] | *[[Display2]] | ||
*[[Display3]] | *[[Display3]] | ||
| + | *[[dm2mrc]] | ||
| + | *[[dmInfo]] | ||
| + | *[[dm2mrc]] | ||
| + | *[[dos2unix]] | ||
| + | *[[electronWaveLength]] | ||
| + | *[[emData2mrc]] | ||
| + | *[[energyTransferModelCheck]] | ||
| + | *[[energyTransferModelResultCheck]] | ||
*[[Eos]] | *[[Eos]] | ||
| + | *[[eosPointProjector]] | ||
| + | *[[eosPointRotation]] | ||
*[[EvaluateCorrelationMapwithCommonLine]] | *[[EvaluateCorrelationMapwithCommonLine]] | ||
| − | *[[ | + | *[[FETmapOrientationSearchBySimultaneousFitting]] |
*[[FETOrientationSearchByAnnealing]] | *[[FETOrientationSearchByAnnealing]] | ||
*[[FETOrientationSearchByFeatureAlignment]] | *[[FETOrientationSearchByFeatureAlignment]] | ||
| − | |||
*[[FETsmallMapSetCreate_forSimultaneousMinimization]] | *[[FETsmallMapSetCreate_forSimultaneousMinimization]] | ||
| + | *[[fft2d]] | ||
| + | *[[gmolvie]] | ||
| + | *[[hf2000Init]] | ||
| + | *[[hf2000LenzCurrent]] | ||
| + | *[[hf2000SpecimenPosition]] | ||
| + | *[[hidaka2009]] | ||
| + | *[[homology2PG]] | ||
| + | *[[hostCondition]] | ||
| + | *[[imagesClustering]] | ||
| + | *[[imagesView]] | ||
| + | *[[imageView]] | ||
| + | *[[imodst2mrc]] | ||
| + | *[[ip2mrc]] | ||
| + | *[[khorosFilterGenerate]] | ||
| + | *[[largeIPInfo]] | ||
*[[LCalculationForOrientationSearch]] | *[[LCalculationForOrientationSearch]] | ||
| − | *[[ | + | *[[ll2ltlg]] |
| + | *[[llDataAverage]] | ||
| + | *[[llDataAxisSearch]] | ||
| + | *[[llDataCompare]] | ||
| + | *[[llDataContributionCalcDifferentN]] | ||
| + | *[[llDataCTFCompensate]] | ||
| + | *[[llDataDump]] | ||
| + | *[[llDataEquatorAdd]] | ||
| + | *[[llDataExtract]] | ||
| + | *[[llDataFit]] | ||
| + | *[[llDataFitServer]] | ||
| + | *[[llDataInfo]] | ||
| + | *[[llDataLowPassFiltering]] | ||
| + | *[[llDataMultiCTFCompensation]] | ||
| + | *[[llDataNEstimation]] | ||
| + | *[[llDataNormalization]] | ||
| + | *[[llDataPrint]] | ||
| + | *[[llDataRescaling]] | ||
| + | *[[llDataResolutionCheck]] | ||
| + | *[[llDatarMaxLimit]] | ||
| + | *[[llDataRotation]] | ||
| + | *[[llDataSelectionEstimation]] | ||
| + | *[[llDataSeparate]] | ||
| + | *[[llDataWeightSet]] | ||
| + | *[[llExtract]] | ||
| + | *[[llExtractCtfinfFileCreate]] | ||
| + | *[[llExtractCtrlFileCreate]] | ||
| + | *[[llExtractWithLayerSeparation]] | ||
| + | *[[llExtractWithLayerSeparationCtrlFileCreate]] | ||
| + | *[[llExtractWithLayerSeparationCtrlFileCreateMyosin]] | ||
| + | *[[llExtractWithLayerSeparationFilamentInfo]] | ||
| + | *[[llExtractWithLayerSeparationServer]] | ||
| + | *[[llExtractWithLayerSeparationSingle]] | ||
| + | *[[ltlg2mrc]] | ||
| + | *[[ltlg2ps]] | ||
| + | *[[ltlgDataInfo]] | ||
| + | *[[mallocCheck]] | ||
| + | *[[marker2Dto3DEstimator]] | ||
| + | *[[matrix3DEulerAngleTransform]] | ||
| + | *[[matrix3DFromEulerAngle]] | ||
| + | *[[matrix3DInverse]] | ||
| + | *[[matrix3DToEulerAngle]] | ||
| + | *[[moi2mrc]] | ||
| + | *[[molecularEnvelopeResampling]] | ||
| + | *[[molecularWeightCalc]] | ||
| + | *[[molvie]] | ||
| + | *[[molvieDock]] | ||
| + | *[[molvieFlight]] | ||
| + | *[[molvieMrcViewer]] | ||
| + | *[[molvieProjection]] | ||
| + | *[[molvieViewer]] | ||
| + | *[[mrc2ascii]] | ||
| + | *[[mrc2bild]] | ||
| + | *[[mrc2dsn6]] | ||
| + | *[[mrc2Dto3D]] | ||
| + | *[[mrc2Dto3DforVariation]] | ||
| + | *[[mrc2fld]] | ||
| + | *[[mrc2gif]] | ||
| + | *[[mrc2hdf]] | ||
| + | *[[mrc2lattice]] | ||
| + | *[[mrc2map]] | ||
| + | *[[mrc2mrc]] | ||
| + | *[[mrc2png]] | ||
| + | *[[mrc2pov]] | ||
| + | *[[mrc2tiff]] | ||
| + | *[[mrc2viff]] | ||
| + | *[[mrc3DExtractZ]] | ||
| + | *[[mrc3Dto2D]] | ||
| + | *[[mrcFETnormalizeBySD]] | ||
| + | *[[mrcFFTBandPassFilter]] | ||
| + | *[[mrcFFTCTFCompensation]] | ||
| + | *[[mrcFFTDigitize]] | ||
| + | *[[mrcFFTExpression]] | ||
| + | *[[mrcFFTFibreDiagram]] | ||
| + | *[[mrcFFTFiltering]] | ||
| + | *[[mrcFFTInfo]] | ||
| + | *[[mrcFFTIQEstimation]] | ||
| + | *[[mrcFFTLayerLineCheck]] | ||
| + | *[[mrcFFTMedianFilter]] | ||
| + | *[[mrcFFTplainreduce]] | ||
| + | *[[mrcFFTProjection]] | ||
| + | *[[mrcFFTResampling]] | ||
| + | *[[mrcFFTShellInfo]] | ||
| + | *[[mrcFFTSizeChange]] | ||
| + | *[[mrcFFTSpectrum]] | ||
| + | *[[mrcFFTXFiltering]] | ||
| + | *[[mrcFTMeridianEquatorRedece]] | ||
| + | *[[mrcImageHoleFilling]] | ||
| + | *[[mrcImage1dAverageByCorrelation]] | ||
| + | *[[mrcImage1dCutAverage]] | ||
| + | *[[mrcImage1DProjectionfrom2D]] | ||
| + | *[[mrcImage1dShiftAverageByAnnealing]] | ||
| + | *[[mrcImage1dShiftByCorrelation]] | ||
| + | *[[mrcImage2DBackProjection]] | ||
| + | *[[mrcImage2DProjection]] | ||
| + | *[[mrcImage2FFT]] | ||
| + | *[[mrcImage2pdb]] | ||
| + | *[[mrcImage3DHighResoEmphasis]] | ||
| + | *[[mrcImage3DPad]] | ||
| + | *[[mrcImage3DPad2]] | ||
| + | *[[mrcImage3DSymmetryFind]] | ||
| + | *[[mrcImage3DWindowing]] | ||
| + | *[[mrcImageAbnormalValueRemove]] | ||
| + | *[[mrcImageActinSingleParticleAnalysis]] | ||
| + | *[[mrcImageAdaptiveBinalization]] | ||
| + | *[[mrcImageAdd]] | ||
| + | *[[mrcImageAddValue]] | ||
| + | *[[mrcImageAreaCalc]] | ||
| + | *[[mrcImageAsProbability]] | ||
| + | *[[mrcImageAssignedToTFofPDB]] | ||
| + | *[[mrcImageAutoCorrelationWithWindowing]] | ||
| + | *[[mrcImageAutoFilamentExtract]] | ||
| + | *[[mrcImageAutoFilamentExtractResultAnalysis]] | ||
| + | *[[mrcImageAutoRotationAverage]] | ||
| + | *[[mrcImageAutoRotationCorrelation]] | ||
| + | *[[mrcImageAutoRotationCorrelation3D]] | ||
| + | *[[mrcImageAutoRotationCorrelationResultPrint]] | ||
| + | *[[mrcImageAutoTriming]] | ||
| + | *[[mrcImageAverage]] | ||
| + | *[[mrcImageBandPassFilter]] | ||
| + | *[[mrcImageBilateralFilter]] | ||
| + | *[[mrcImageBinalization]] | ||
| + | *[[mrcImageBlockMerge]] | ||
| + | *[[mrcImageBottomHatTransform]] | ||
| + | *[[mrcImageBoundaryInfo]] | ||
| + | *[[mrcImageBtest]] | ||
| + | *[[mrcImageCCDNoiseRemove]] | ||
| + | *[[mrcImageCenterDensityChange]] | ||
| + | *[[mrcImageCenterGet]] | ||
| + | *[[mrcImageCenterOfMassCalculate]] | ||
| + | *[[mrcImageCircumferentialProjection]] | ||
| + | *[[mrcImageClosing]] | ||
| + | *[[mrcImageClusterAnalysis]] | ||
| + | *[[mrcImageColoring]] | ||
| + | *[[mrcImageCommonLineSearch]] | ||
| + | *[[mrcImageConnection]] | ||
| + | *[[mrcImageConnectivityNumberCalc]] | ||
| + | *[[mrcImageContourSurfaceCreate]] | ||
| + | *[[mrcImageConvolution]] | ||
| + | *[[mrcImageCoordinateChange]] | ||
| + | *[[mrcImageCoreImageCalc]] | ||
| + | *[[mrcImageCorrelation]] | ||
| + | *[[mrcImageCorrelationInFourierSpace]] | ||
| + | *[[mrcImageCorrelationServer]] | ||
| + | *[[mrcImageCorrelationWithCTFCompensation]] | ||
| + | *[[mrcImageCrystalCreate]] | ||
| + | *[[mrcImageCTFCompensation]] | ||
| + | *[[mrcImageCTFCompensationForTiltImage]] | ||
| + | *[[mrcImageCTFDetermination]] | ||
| + | *[[mrcImageCTFObservation]] | ||
| + | *[[mrcImageCTFSN]] | ||
| + | *[[mrcImageCutAndSetInArray]] | ||
| + | *[[mrcImageCVE]] | ||
| + | *[[mrcImageCylinderSection]] | ||
| + | *[[mrcImageDeadPixelCorrection]] | ||
| + | *[[mrcImageDeconvolution]] | ||
| + | *[[mrcImageDensityChangeEstimation]] | ||
| + | *[[mrcImageDensityInfo]] | ||
| + | *[[mrcImageDensityNormalization]] | ||
| + | *[[mrcImageDensityNormalizationByImage]] | ||
| + | *[[mrcImageDilation]] | ||
| + | *[[mrcImageDisplayDensityAsTempFactor]] | ||
| + | *[[mrcImageDistanceConversion]] | ||
| + | *[[mrcImageDividedByFile]] | ||
| + | *[[mrcImageDivideInfoForTomography]] | ||
| + | *[[mrcImageDivideIntoTwoImages]] | ||
| + | *[[mrcImageEdgeEnhancement]] | ||
| + | *[[mrcImageEdgeImageGet]] | ||
| + | *[[mrcImageEnhancementWithFuzzySets]] | ||
| + | *[[mrcImageErosion]] | ||
| + | *[[mrcImageEstimateTiltImage]] | ||
| + | *[[mrcImageExpression]] | ||
| + | *[[mrcImageFeatureCalc]] | ||
| + | *[[mrcImageFeatureExtraction]] | ||
| + | *[[mrcImageFFT]] | ||
| + | *[[mrcImageFFTLayerLineExtraction]] | ||
| + | *[[mrcImageFFTSetsExtract]] | ||
| + | *[[mrcImageFilamentSearch]] | ||
| + | *[[mrcImageFilterCreate]] | ||
| + | *[[mrcImageFilteringbyFile]] | ||
| + | *[[mrcImageFilteringbyFileForVariance]] | ||
| + | *[[mrcImageFloating]] | ||
| + | *[[mrcImageFOMCalc]] | ||
| + | *[[mrcImageFourierNeighborCorrelation]] | ||
| + | *[[mrcImageFourierPowerSpectrum]] | ||
| + | *[[mrcImageFourierShellCorrelation]] | ||
| + | *[[mrcImageFractalFourierShellCorrelation]] | ||
| + | *[[mrcImageFTest]] | ||
| + | *[[mrcImageGaussDisc]] | ||
| + | *[[mrcImageGaussSphere]] | ||
| + | *[[mrcImageHeaderChange]] | ||
| + | *[[mrcImageHelicalAveraging]] | ||
| + | *[[mrcImageHelicalConvolution]] | ||
| + | *[[mrcImageHelicalMappingFrom2DImage]] | ||
| + | *[[mrcImageHelicalMasking]] | ||
| + | *[[mrcImageHelicalMaskingBy2DImage]] | ||
| + | *[[mrcImageHelicalProjection]] | ||
| + | *[[mrcImageHighlighting]] | ||
| + | *[[mrcImageHighPassFilter]] | ||
| + | *[[mrcImageHoughTransform]] | ||
| + | *[[mrcImageHoughTransformInverse]] | ||
| + | *[[mrcImageInfo]] | ||
| + | *[[mrcImageInverseRadonTransform]] | ||
| + | *[[mrcImageLabeling]] | ||
| + | *[[mrcImageLogicalOperation]] | ||
| + | *[[mrcImageLowPassFilter]] | ||
| + | *[[mrcImageMagnificationChange]] | ||
| + | *[[mrcImageMake2DArrayImage]] | ||
| + | *[[mrcImageMakeCylinder]] | ||
| + | *[[mrcImageMakeDump]] | ||
| + | *[[mrcImageMakeFromTextFile]] | ||
| + | *[[mrcImageMakeSphere]] | ||
| + | *[[mrcImageMappingtoPdb]] | ||
| + | *[[mrcImageMasking]] | ||
| + | *[[mrcImageMaskingByImage]] | ||
| + | *[[mrcImageMeanFreePathCalc]] | ||
| + | *[[mrcImageMergebyside]] | ||
| + | *[[mrcImageMirroring]] | ||
| + | *[[mrcImageModeChange]] | ||
| + | *[[mrcImageModelCreate]] | ||
| + | *[[mrcImageModelSubfilamentsCreate]] | ||
| + | *[[mrcImageMontageCreate]] | ||
| + | *[[mrcImageMove]] | ||
| + | *[[mrcImageMultiCTFCompensation]] | ||
| + | *[[mrcImageMultiCTFDetermination]] | ||
| + | *[[mrcImageMultiplying]] | ||
| + | *[[mrcImageMultiplyingbyFile]] | ||
| + | *[[mrcImageNeuralNetParticleExtraction]] | ||
| + | *[[mrcImageNeuralNetParticleLearning]] | ||
| + | *[[mrcImageNfoldAxisSearch]] | ||
| + | *[[mrcImageNLMeansFilter]] | ||
| + | *[[mrcImageNoiseAdd]] | ||
| + | *[[mrcImageNoiseCreate]] | ||
| + | *[[mrcImageNoiseReductionByRelaxation]] | ||
| + | *[[mrcImageNormalDistributionTest]] | ||
| + | *[[mrcImageNormalizedSubtraction]] | ||
| + | *[[mrcImageNormalizing]] | ||
| + | *[[mrcImageNullImageCreate]] | ||
| + | *[[mrcImageOddBoxel]] | ||
| + | *[[mrcImageOneLineSimilarityCalc]] | ||
| + | *[[mrcImageOpening]] | ||
| + | *[[mrcImageOrientationSearch]] | ||
| + | *[[mrcImageOrientationSearchByHigherSelection]] | ||
| + | *[[mrcImageOrientationSearchByHybridization]] | ||
| + | *[[mrcImageOrientationSearchBySimultaneousMinimization]] | ||
| + | *[[mrcImagePad]] | ||
| + | *[[mrcImagePanoramaCreate]] | ||
| + | *[[mrcImageParticleCandidateExtract]] | ||
| + | *[[mrcImagePattersionFunctionCalc]] | ||
| + | *[[mrcImagePCA]] | ||
| + | *[[mrcImagepdbFileReduce]] | ||
| + | *[[mrcImagePeakSearch]] | ||
| + | *[[mrcImagePhaseCTFCompensationFromCTFINFO]] | ||
| + | *[[mrcImagePixelDataGet]] | ||
| + | *[[mrcImagePolyROI]] | ||
| + | *[[mrcImagePosterization]] | ||
| + | *[[mrcImagePrint]] | ||
| + | *[[mrcImagePrint3D]] | ||
| + | *[[mrcImageProjection]] | ||
| + | *[[mrcImagePut3D]] | ||
| + | *[[mrcImageRadialDistribution]] | ||
| + | *[[mrcImageRadonTransform]] | ||
| + | *[[mrcImageRandomParticlesImageCreate]] | ||
| + | *[[mrcImageRealValueAdd]] | ||
| + | *[[mrcImageRectangleGet]] | ||
| + | *[[mrcImageRectangleGetByCorrelation]] | ||
| + | *[[mrcImageRefConv2D]] | ||
| + | *[[mrcImageRefCreate]] | ||
| + | *[[mrcImageRefFFTConv2D]] | ||
| + | *[[mrcImageRefScaleChangeWithPad]] | ||
| + | *[[mrcImageResolutionEstimateForFilaments]] | ||
| + | *[[mrcImageReverse]] | ||
| + | *[[mrcImageROI]] | ||
| + | *[[mrcImageROI3D]] | ||
| + | *[[mrcImageROIs]] | ||
| + | *[[mrcImageROItoPCAoutputImage]] | ||
| + | *[[mrcImageRotation]] | ||
| + | *[[mrcImageRotation3D]] | ||
| + | *[[mrcImageSamplingUnitChange]] | ||
| + | *[[mrcImageScalarAdd]] | ||
| + | *[[mrcImageSectionGet]] | ||
| + | *[[mrcImageSetFunction]] | ||
| + | *[[mrcImageShapeOrientation]] | ||
| + | *[[mrcImageShapePCA]] | ||
| + | *[[mrcImageShapePCAFit]] | ||
| + | *[[mrcImageShapeSearch]] | ||
| + | *[[mrcImageShift]] | ||
| + | *[[mrcImageShiftFollowingGC]] | ||
| + | *[[mrcImageShrink]] | ||
| + | *[[mrcImageSiemensStar]] | ||
| + | *[[mrcImageSimilarImageSearch]] | ||
| + | *[[mrcImageSimilarityEstimate]] | ||
| + | *[[mrcImageSinogramCorrelation]] | ||
| + | *[[mrcImageSinogramCreate]] | ||
| + | *[[mrcImageSinogramFFT]] | ||
| + | *[[mrcImageSmoothing]] | ||
| + | *[[mrcImageSN]] | ||
| + | *[[mrcImageSolventFlattening]] | ||
| + | *[[mrcImageSpatialFrequencyFilter]] | ||
| + | *[[mrcImageSphere]] | ||
| + | *[[mrcImageSphereCheck]] | ||
| + | *[[mrcImageSplit]] | ||
| + | *[[mrcImageSquare]] | ||
| + | *[[mrcImagesSinogramCorrelation]] | ||
| + | *[[mrcImageStack]] | ||
| + | *[[mrcImageStandardDeviation]] | ||
| + | *[[mrcImagestoRef]] | ||
| + | *[[mrcImageSubtraction]] | ||
| + | *[[mrcImageSuperResolution]] | ||
| + | *[[mrcImageSymmetryAverage]] | ||
| + | *[[mrcImageSymmetryCentreFind]] | ||
| + | *[[mrcImageSymmetryFind]] | ||
| + | *[[mrcImageTfunction]] | ||
| + | *[[mrcImageTiltAxisSearch]] | ||
| + | *[[mrcImageTiltAxisSearchHelp]] | ||
| + | *[[mrcImageToNAMDConstantForces]] | ||
| + | *[[mrcImageToneReversal]] | ||
| + | *[[mrcImageTopHatTransform]] | ||
| + | *[[mrcImageToPointsSet]] | ||
| + | *[[mrcImageTrans]] | ||
| + | *[[mrcImageTransformDescartesIntoPolar]] | ||
| + | *[[mrcImageTransformSign]] | ||
| + | *[[mrcImageTranspose]] | ||
| + | *[[mrcImageTTest]] | ||
| + | *[[mrcImageTwoImageTest]] | ||
| + | *[[mrcImageUnbentROI]] | ||
| + | *[[mrcImageUnexpectedMassFromPDB]] | ||
| + | *[[mrcImageUntwist]] | ||
| + | *[[mrcImageVarianceAnalysis]] | ||
| + | *[[mrcImageVarianceMap]] | ||
| + | *[[mrcImageVolumeCalc]] | ||
| + | *[[mrcImageWindowing]] | ||
| + | *[[mrcImageZPad]] | ||
| + | *[[mrcImateToPointsSet]] | ||
| + | *[[mrcInfo]] | ||
| + | *[[mrcInfoSet]] | ||
| + | *[[mrcManipulate_kaya]] | ||
| + | *[[mrcMask]] | ||
| + | *[[mrcMeanYlinePos]] | ||
| + | *[[mrcMirrorImageCreate]] | ||
| + | *[[mrcRadon2Dto3D]] | ||
| + | *[[mrcRefCoreGet]] | ||
| + | *[[mrcRefCorEstimate]] | ||
| + | *[[mrcRefCorModify]] | ||
| + | *[[mrcRefCorrelation]] | ||
| + | *[[mrcRefCorrelationConv]] | ||
| + | *[[mrcRefEstimate]] | ||
| + | *[[mrcRefFFTConvert]] | ||
| + | *[[mrcRefHeaderCreate]] | ||
| + | *[[mrcRefHighPassFilter]] | ||
| + | *[[mrcRefImageCorrelation]] | ||
| + | *[[mrcRefImageOmegaCorrelation]] | ||
| + | *[[mrcRefImagepwzCorEstimate]] | ||
| + | *[[mrcRefImagepwzCorModify]] | ||
| + | *[[mrcRefImagepwzCorPeakFind]] | ||
| + | *[[mrcRefImagepwzCorrelation]] | ||
| + | *[[mrcRefImagepwzCorrelationByFFT]] | ||
| + | *[[mrcRefImagepwzCorSmoothing]] | ||
| + | *[[mrcRefImagexaFit]] | ||
| + | *[[mrcRefLowPassFilter]] | ||
| + | *[[mrcRefNoiseAdd]] | ||
| + | *[[mrcRefNormalizing]] | ||
| + | *[[mrcRefPhaseImageCreate]] | ||
| + | *[[mrcRefSmoothing]] | ||
| + | *[[mrcRefz1ImageCorrelation]] | ||
| + | *[[mrcSinogramFET]] | ||
| + | *[[mrcSinogramFETcalcSDforNormalize]] | ||
| + | *[[mrcSinogramFETcalcWeight]] | ||
| + | *[[mrcSinogramFETcorrelationMap]] | ||
| + | *[[mrcSinogramFETnormalizedMap]] | ||
| + | *[[mrcSinogramFETreferredCorrelation]] | ||
| + | *[[mrcSinogramFETsmoothParameterMatching]] | ||
| + | *[[mrcView]] | ||
| + | *[[muscleSimulation]] | ||
| + | *[[obj3Don2DImageView]] | ||
| + | *[[pdb2bender]] | ||
| + | *[[pdb2mrc]] | ||
| + | *[[pdb2mrc2d]] | ||
| + | *[[pdb2mrc2dWithCTF]] | ||
| + | *[[pdb2SketchMacro]] | ||
| + | *[[pdb2ucd]] | ||
| + | *[[pdbAtomSection]] | ||
| + | *[[pdbCAOnly]] | ||
| + | *[[pdbChargeFit]] | ||
| + | *[[pdbCoordAdd]] | ||
| + | *[[pdbCrystalCreate]] | ||
| + | *[[pdbDisplay]] | ||
| + | *[[pdbFileMerge]] | ||
| + | *[[pdbHelix]] | ||
| + | *[[pdbHomologySearch]] | ||
| + | *[[pdbInfo]] | ||
| + | *[[pdbListRMSDCalc]] | ||
| + | *[[pdbListVectorCalc]] | ||
| + | *[[pdbMatrixCreate]] | ||
| + | *[[pdbMolecularInterfaceFind]] | ||
| + | *[[pdbMove]] | ||
| + | *[[pdbNAMDRestraintCreate]] | ||
| + | *[[pdbNearAtomListShow]] | ||
| + | *[[pdbOneProteinGet]] | ||
| + | *[[pdbPCA]] | ||
| + | *[[pdbProteinIDSet]] | ||
| + | *[[pdbRhoFit]] | ||
| + | *[[pdbRhoFitCoiledCoil]] | ||
| + | *[[pdbRhoFitTm]] | ||
| + | *[[pdbRotation]] | ||
| + | *[[pdbSecondaryStructurePrint]] | ||
| + | *[[pdbShapeFit]] | ||
| + | *[[pdbSurface]] | ||
| + | *[[pdbTempFactorSet]] | ||
| + | *[[pdbTrans]] | ||
| + | *[[pdbTwoProteinFit]] | ||
| + | *[[pdbView]] | ||
| + | *[[pdbWaterAdd]] | ||
| + | *[[pgDataBaseSelectServer]] | ||
| + | *[[pgJournalSelect]] | ||
| + | *[[pgJournalSelectCORBAClient]] | ||
| + | *[[pgJournalSelectCORBAServer]] | ||
| + | *[[pgMemoSelectCORBAServer]] | ||
| + | *[[pgSelect]] | ||
| + | *[[pointAffineTransform]] | ||
| + | *[[pointsSetToPDB]] | ||
*[[Polar2Descartes]] | *[[Polar2Descartes]] | ||
| + | *[[probabilityDensityFunction]] | ||
*[[ProjectionDirectionMapCreate]] | *[[ProjectionDirectionMapCreate]] | ||
| − | *[[ | + | *[[psFileMerge]] |
| + | *[[psFilePageMerge]] | ||
| + | *[[randomNormalGet]] | ||
| + | *[[randomUniformGet]] | ||
| + | *[[smolet]] | ||
*[[StereoDisplay]] | *[[StereoDisplay]] | ||
| − | *[[TestForLcalculationOfOrientationSearchBySimultaneousMinimization | + | *[[TestForLcalculationOfOrientationSearchBySimultaneousMinimization]] |
| − | *[[ | + | *[[tgaInfo]] |
| − | *[[ | + | *[[tiff2mrc]] |
| − | *[[ | + | *[[tiltInfoDetermine]] |
| − | *[[ | + | *[[vector2pdb]] |
| − | *[[ | + | *[[vectorImageNearestNeighborMethod]] |
| − | *[[ | + | *[[Visualmake]] |
| − | *[[ | + | *[[WeightCalculationOfCommonLineSearch]] |
| − | *[[ | + | *[[WeightCalculationOfCommonLineSearchByAllSinogram]] |
| − | *[[ | + | *[[WeigthCaluculationOfCommonLineCalculation]] |
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2018年6月1日 (金) 05:45時点における最新版
Eosに実装されているコマンドの一覧(アルファベット順)。機能別のコマンドを調べたいときにはこちらをご覧下さい。
- こちらのシェルスクリプトを使用すると、ターミナルなどからの入力で各コマンドのページに移動することができます。
- templateCommandWiki コマンドのヘルプを書くためのテンプレート
- このコマンド一覧はこちらのシェルスクリプトを利用して作成しています。
コマンド一覧
- anglediffcalc
- anglediffchk
- angleMatchTest_k
- array2mrc
- arrayPCA
- bin2mrc
- bmp2mrc
- bmpFileInfo
- calcCommonLine
- CheckCommonLineData
- CheckOfOrientation
- CheckOrientationByDegree
- clusterLog2ToLog
- clusterLogASCII2Binary
- clusterShow
- CommonLineCalculation
- CommonLineRankCalc_k
- commonLinesSearchByVoting
- coordRotation
- ctfDeterminationFromMultiImage
- ctfDeterminationFromPhaseComparison
- ctfDeterminationFromThonRing
- ctfDetermine
- ctfDisplay
- ctfEnvelopFunction
- ctfEnvelopFunctionEstimate
- ctfFunction
- ctfFunctionServer
- ctfInfoSet
- ctfMultiFunction
- ctfWeightMapCreation
- ctfZeroPoint
- cufft
- dataAnalysis_kayabuki
- dcdAtomChangeDistanceFromAtom
- dcdAtomDistanceDistribution
- dcdCompareCA
- dcdDistanceAtomBetweenAtom
- dcdFilePrint
- dcdInfo
- dcdSelectAtoms
- dcdSerectAtom
- dcdTest
- dcdTimeSeriesBehavior
- defocusDeterminationFromThonRing
- Descartes2Polar
- Display2
- Display3
- dm2mrc
- dmInfo
- dm2mrc
- dos2unix
- electronWaveLength
- emData2mrc
- energyTransferModelCheck
- energyTransferModelResultCheck
- Eos
- eosPointProjector
- eosPointRotation
- EvaluateCorrelationMapwithCommonLine
- FETmapOrientationSearchBySimultaneousFitting
- FETOrientationSearchByAnnealing
- FETOrientationSearchByFeatureAlignment
- FETsmallMapSetCreate_forSimultaneousMinimization
- fft2d
- gmolvie
- hf2000Init
- hf2000LenzCurrent
- hf2000SpecimenPosition
- hidaka2009
- homology2PG
- hostCondition
- imagesClustering
- imagesView
- imageView
- imodst2mrc
- ip2mrc
- khorosFilterGenerate
- largeIPInfo
- LCalculationForOrientationSearch
- ll2ltlg
- llDataAverage
- llDataAxisSearch
- llDataCompare
- llDataContributionCalcDifferentN
- llDataCTFCompensate
- llDataDump
- llDataEquatorAdd
- llDataExtract
- llDataFit
- llDataFitServer
- llDataInfo
- llDataLowPassFiltering
- llDataMultiCTFCompensation
- llDataNEstimation
- llDataNormalization
- llDataPrint
- llDataRescaling
- llDataResolutionCheck
- llDatarMaxLimit
- llDataRotation
- llDataSelectionEstimation
- llDataSeparate
- llDataWeightSet
- llExtract
- llExtractCtfinfFileCreate
- llExtractCtrlFileCreate
- llExtractWithLayerSeparation
- llExtractWithLayerSeparationCtrlFileCreate
- llExtractWithLayerSeparationCtrlFileCreateMyosin
- llExtractWithLayerSeparationFilamentInfo
- llExtractWithLayerSeparationServer
- llExtractWithLayerSeparationSingle
- ltlg2mrc
- ltlg2ps
- ltlgDataInfo
- mallocCheck
- marker2Dto3DEstimator
- matrix3DEulerAngleTransform
- matrix3DFromEulerAngle
- matrix3DInverse
- matrix3DToEulerAngle
- moi2mrc
- molecularEnvelopeResampling
- molecularWeightCalc
- molvie
- molvieDock
- molvieFlight
- molvieMrcViewer
- molvieProjection
- molvieViewer
- mrc2ascii
- mrc2bild
- mrc2dsn6
- mrc2Dto3D
- mrc2Dto3DforVariation
- mrc2fld
- mrc2gif
- mrc2hdf
- mrc2lattice
- mrc2map
- mrc2mrc
- mrc2png
- mrc2pov
- mrc2tiff
- mrc2viff
- mrc3DExtractZ
- mrc3Dto2D
- mrcFETnormalizeBySD
- mrcFFTBandPassFilter
- mrcFFTCTFCompensation
- mrcFFTDigitize
- mrcFFTExpression
- mrcFFTFibreDiagram
- mrcFFTFiltering
- mrcFFTInfo
- mrcFFTIQEstimation
- mrcFFTLayerLineCheck
- mrcFFTMedianFilter
- mrcFFTplainreduce
- mrcFFTProjection
- mrcFFTResampling
- mrcFFTShellInfo
- mrcFFTSizeChange
- mrcFFTSpectrum
- mrcFFTXFiltering
- mrcFTMeridianEquatorRedece
- mrcImageHoleFilling
- mrcImage1dAverageByCorrelation
- mrcImage1dCutAverage
- mrcImage1DProjectionfrom2D
- mrcImage1dShiftAverageByAnnealing
- mrcImage1dShiftByCorrelation
- mrcImage2DBackProjection
- mrcImage2DProjection
- mrcImage2FFT
- mrcImage2pdb
- mrcImage3DHighResoEmphasis
- mrcImage3DPad
- mrcImage3DPad2
- mrcImage3DSymmetryFind
- mrcImage3DWindowing
- mrcImageAbnormalValueRemove
- mrcImageActinSingleParticleAnalysis
- mrcImageAdaptiveBinalization
- mrcImageAdd
- mrcImageAddValue
- mrcImageAreaCalc
- mrcImageAsProbability
- mrcImageAssignedToTFofPDB
- mrcImageAutoCorrelationWithWindowing
- mrcImageAutoFilamentExtract
- mrcImageAutoFilamentExtractResultAnalysis
- mrcImageAutoRotationAverage
- mrcImageAutoRotationCorrelation
- mrcImageAutoRotationCorrelation3D
- mrcImageAutoRotationCorrelationResultPrint
- mrcImageAutoTriming
- mrcImageAverage
- mrcImageBandPassFilter
- mrcImageBilateralFilter
- mrcImageBinalization
- mrcImageBlockMerge
- mrcImageBottomHatTransform
- mrcImageBoundaryInfo
- mrcImageBtest
- mrcImageCCDNoiseRemove
- mrcImageCenterDensityChange
- mrcImageCenterGet
- mrcImageCenterOfMassCalculate
- mrcImageCircumferentialProjection
- mrcImageClosing
- mrcImageClusterAnalysis
- mrcImageColoring
- mrcImageCommonLineSearch
- mrcImageConnection
- mrcImageConnectivityNumberCalc
- mrcImageContourSurfaceCreate
- mrcImageConvolution
- mrcImageCoordinateChange
- mrcImageCoreImageCalc
- mrcImageCorrelation
- mrcImageCorrelationInFourierSpace
- mrcImageCorrelationServer
- mrcImageCorrelationWithCTFCompensation
- mrcImageCrystalCreate
- mrcImageCTFCompensation
- mrcImageCTFCompensationForTiltImage
- mrcImageCTFDetermination
- mrcImageCTFObservation
- mrcImageCTFSN
- mrcImageCutAndSetInArray
- mrcImageCVE
- mrcImageCylinderSection
- mrcImageDeadPixelCorrection
- mrcImageDeconvolution
- mrcImageDensityChangeEstimation
- mrcImageDensityInfo
- mrcImageDensityNormalization
- mrcImageDensityNormalizationByImage
- mrcImageDilation
- mrcImageDisplayDensityAsTempFactor
- mrcImageDistanceConversion
- mrcImageDividedByFile
- mrcImageDivideInfoForTomography
- mrcImageDivideIntoTwoImages
- mrcImageEdgeEnhancement
- mrcImageEdgeImageGet
- mrcImageEnhancementWithFuzzySets
- mrcImageErosion
- mrcImageEstimateTiltImage
- mrcImageExpression
- mrcImageFeatureCalc
- mrcImageFeatureExtraction
- mrcImageFFT
- mrcImageFFTLayerLineExtraction
- mrcImageFFTSetsExtract
- mrcImageFilamentSearch
- mrcImageFilterCreate
- mrcImageFilteringbyFile
- mrcImageFilteringbyFileForVariance
- mrcImageFloating
- mrcImageFOMCalc
- mrcImageFourierNeighborCorrelation
- mrcImageFourierPowerSpectrum
- mrcImageFourierShellCorrelation
- mrcImageFractalFourierShellCorrelation
- mrcImageFTest
- mrcImageGaussDisc
- mrcImageGaussSphere
- mrcImageHeaderChange
- mrcImageHelicalAveraging
- mrcImageHelicalConvolution
- mrcImageHelicalMappingFrom2DImage
- mrcImageHelicalMasking
- mrcImageHelicalMaskingBy2DImage
- mrcImageHelicalProjection
- mrcImageHighlighting
- mrcImageHighPassFilter
- mrcImageHoughTransform
- mrcImageHoughTransformInverse
- mrcImageInfo
- mrcImageInverseRadonTransform
- mrcImageLabeling
- mrcImageLogicalOperation
- mrcImageLowPassFilter
- mrcImageMagnificationChange
- mrcImageMake2DArrayImage
- mrcImageMakeCylinder
- mrcImageMakeDump
- mrcImageMakeFromTextFile
- mrcImageMakeSphere
- mrcImageMappingtoPdb
- mrcImageMasking
- mrcImageMaskingByImage
- mrcImageMeanFreePathCalc
- mrcImageMergebyside
- mrcImageMirroring
- mrcImageModeChange
- mrcImageModelCreate
- mrcImageModelSubfilamentsCreate
- mrcImageMontageCreate
- mrcImageMove
- mrcImageMultiCTFCompensation
- mrcImageMultiCTFDetermination
- mrcImageMultiplying
- mrcImageMultiplyingbyFile
- mrcImageNeuralNetParticleExtraction
- mrcImageNeuralNetParticleLearning
- mrcImageNfoldAxisSearch
- mrcImageNLMeansFilter
- mrcImageNoiseAdd
- mrcImageNoiseCreate
- mrcImageNoiseReductionByRelaxation
- mrcImageNormalDistributionTest
- mrcImageNormalizedSubtraction
- mrcImageNormalizing
- mrcImageNullImageCreate
- mrcImageOddBoxel
- mrcImageOneLineSimilarityCalc
- mrcImageOpening
- mrcImageOrientationSearch
- mrcImageOrientationSearchByHigherSelection
- mrcImageOrientationSearchByHybridization
- mrcImageOrientationSearchBySimultaneousMinimization
- mrcImagePad
- mrcImagePanoramaCreate
- mrcImageParticleCandidateExtract
- mrcImagePattersionFunctionCalc
- mrcImagePCA
- mrcImagepdbFileReduce
- mrcImagePeakSearch
- mrcImagePhaseCTFCompensationFromCTFINFO
- mrcImagePixelDataGet
- mrcImagePolyROI
- mrcImagePosterization
- mrcImagePrint
- mrcImagePrint3D
- mrcImageProjection
- mrcImagePut3D
- mrcImageRadialDistribution
- mrcImageRadonTransform
- mrcImageRandomParticlesImageCreate
- mrcImageRealValueAdd
- mrcImageRectangleGet
- mrcImageRectangleGetByCorrelation
- mrcImageRefConv2D
- mrcImageRefCreate
- mrcImageRefFFTConv2D
- mrcImageRefScaleChangeWithPad
- mrcImageResolutionEstimateForFilaments
- mrcImageReverse
- mrcImageROI
- mrcImageROI3D
- mrcImageROIs
- mrcImageROItoPCAoutputImage
- mrcImageRotation
- mrcImageRotation3D
- mrcImageSamplingUnitChange
- mrcImageScalarAdd
- mrcImageSectionGet
- mrcImageSetFunction
- mrcImageShapeOrientation
- mrcImageShapePCA
- mrcImageShapePCAFit
- mrcImageShapeSearch
- mrcImageShift
- mrcImageShiftFollowingGC
- mrcImageShrink
- mrcImageSiemensStar
- mrcImageSimilarImageSearch
- mrcImageSimilarityEstimate
- mrcImageSinogramCorrelation
- mrcImageSinogramCreate
- mrcImageSinogramFFT
- mrcImageSmoothing
- mrcImageSN
- mrcImageSolventFlattening
- mrcImageSpatialFrequencyFilter
- mrcImageSphere
- mrcImageSphereCheck
- mrcImageSplit
- mrcImageSquare
- mrcImagesSinogramCorrelation
- mrcImageStack
- mrcImageStandardDeviation
- mrcImagestoRef
- mrcImageSubtraction
- mrcImageSuperResolution
- mrcImageSymmetryAverage
- mrcImageSymmetryCentreFind
- mrcImageSymmetryFind
- mrcImageTfunction
- mrcImageTiltAxisSearch
- mrcImageTiltAxisSearchHelp
- mrcImageToNAMDConstantForces
- mrcImageToneReversal
- mrcImageTopHatTransform
- mrcImageToPointsSet
- mrcImageTrans
- mrcImageTransformDescartesIntoPolar
- mrcImageTransformSign
- mrcImageTranspose
- mrcImageTTest
- mrcImageTwoImageTest
- mrcImageUnbentROI
- mrcImageUnexpectedMassFromPDB
- mrcImageUntwist
- mrcImageVarianceAnalysis
- mrcImageVarianceMap
- mrcImageVolumeCalc
- mrcImageWindowing
- mrcImageZPad
- mrcImateToPointsSet
- mrcInfo
- mrcInfoSet
- mrcManipulate_kaya
- mrcMask
- mrcMeanYlinePos
- mrcMirrorImageCreate
- mrcRadon2Dto3D
- mrcRefCoreGet
- mrcRefCorEstimate
- mrcRefCorModify
- mrcRefCorrelation
- mrcRefCorrelationConv
- mrcRefEstimate
- mrcRefFFTConvert
- mrcRefHeaderCreate
- mrcRefHighPassFilter
- mrcRefImageCorrelation
- mrcRefImageOmegaCorrelation
- mrcRefImagepwzCorEstimate
- mrcRefImagepwzCorModify
- mrcRefImagepwzCorPeakFind
- mrcRefImagepwzCorrelation
- mrcRefImagepwzCorrelationByFFT
- mrcRefImagepwzCorSmoothing
- mrcRefImagexaFit
- mrcRefLowPassFilter
- mrcRefNoiseAdd
- mrcRefNormalizing
- mrcRefPhaseImageCreate
- mrcRefSmoothing
- mrcRefz1ImageCorrelation
- mrcSinogramFET
- mrcSinogramFETcalcSDforNormalize
- mrcSinogramFETcalcWeight
- mrcSinogramFETcorrelationMap
- mrcSinogramFETnormalizedMap
- mrcSinogramFETreferredCorrelation
- mrcSinogramFETsmoothParameterMatching
- mrcView
- muscleSimulation
- obj3Don2DImageView
- pdb2bender
- pdb2mrc
- pdb2mrc2d
- pdb2mrc2dWithCTF
- pdb2SketchMacro
- pdb2ucd
- pdbAtomSection
- pdbCAOnly
- pdbChargeFit
- pdbCoordAdd
- pdbCrystalCreate
- pdbDisplay
- pdbFileMerge
- pdbHelix
- pdbHomologySearch
- pdbInfo
- pdbListRMSDCalc
- pdbListVectorCalc
- pdbMatrixCreate
- pdbMolecularInterfaceFind
- pdbMove
- pdbNAMDRestraintCreate
- pdbNearAtomListShow
- pdbOneProteinGet
- pdbPCA
- pdbProteinIDSet
- pdbRhoFit
- pdbRhoFitCoiledCoil
- pdbRhoFitTm
- pdbRotation
- pdbSecondaryStructurePrint
- pdbShapeFit
- pdbSurface
- pdbTempFactorSet
- pdbTrans
- pdbTwoProteinFit
- pdbView
- pdbWaterAdd
- pgDataBaseSelectServer
- pgJournalSelect
- pgJournalSelectCORBAClient
- pgJournalSelectCORBAServer
- pgMemoSelectCORBAServer
- pgSelect
- pointAffineTransform
- pointsSetToPDB
- Polar2Descartes
- probabilityDensityFunction
- ProjectionDirectionMapCreate
- psFileMerge
- psFilePageMerge
- randomNormalGet
- randomUniformGet
- smolet
- StereoDisplay
- TestForLcalculationOfOrientationSearchBySimultaneousMinimization
- tgaInfo
- tiff2mrc
- tiltInfoDetermine
- vector2pdb
- vectorImageNearestNeighborMethod
- Visualmake
- WeightCalculationOfCommonLineSearch
- WeightCalculationOfCommonLineSearchByAllSinogram
- WeigthCaluculationOfCommonLineCalculation
